Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= AAMG01000056.1 Length=332 Score E Sequences producing significant alignments: (Bits) Value seq4110 91.5 3e-16 seq1601 80.6 5e-13 seq3065 75.2 2e-11 >seq4110 Length=2169 Score = 91.5 bits (100), Expect = 3e-16 Identities = 140/196 (71%), Gaps = 3/196 (2%) Strand=Plus/Plus Query 136 CTTTAACCGGCTATTCCGTCAGCCGGCGGCGTTGTCACTCCTGCGTCCCCACGTCACCCT 195 ||||||| |||||||||||| |||| | ||| || |||| || | |||| | Sbjct 429 CTTTAACGAACTATTCCGTCAGTTCGCGGTACTTTCATCACTCCGTCGCCCCATCACAAT 488 Query 196 CAAATGTAGTAACGGAATACTAACCGTTTCTGCCATCGG-TCTCGCCGTTCGGCTGAACC 254 | | |||| |||||| ||||| || ||||||| | || || ||||| | || Sbjct 489 TGTAAGAAGTACGGGAATATTAACCCGTTG-GCCATCGACTGTC-CCTTTCGGGTTCGCC 546 Query 255 TTATGACCCGACTTACCCTGATCCGATTAGCGGTGATCAGGAAACCTTAGTCTTTCGGCG 314 ||| ||||||||| ||||| | | ||||||| | | ||||||||||||||||||| | Sbjct 547 TTAGGACCCGACTAACCCTCAGCTGATTAGCATAGCTGTGGAAACCTTAGTCTTTCGGTG 606 Query 315 AGGGGGTTTCCCACCC 330 | ||||||| | ||| Sbjct 607 TGCGGGTTTCTCGCCC 622 >seq1601 Length=10388 Score = 80.6 bits (88), Expect = 5e-13 Identities = 161/230 (70%), Gaps = 9/230 (4%) Strand=Plus/Minus Query 105 GGATTTGCCTGCGGAAATCAACGTCTACACTCTTTAACCGGCTATTCCGTCAGCCGGCGG 164 |||||||||| ||| |||| |||||| ||| |||||| ||| || ||||| | Sbjct 4287 GGATTTGCCTAAAGAAC-CAAC--CTACACGCTTGAACCGGGACATCCAACACCCGGCTG 4231 Query 165 CGTTGTCACTCCTGCGTCCCCACGTCACCCTCAAATGTAGTAAC-GGAATACTAACC-GT 222 | | || || ||||||||| || | | | | ||| || |||||| ||||| || Sbjct 4230 ACCTAAC-CTTCTCCGTCCCCACATCGCATTGTA-TATAGGTACAGGAATATTAACCTGT 4173 Query 223 TTCTGCCATCGGTCTCGCCGTTCGGCTGAACCTTATGACCCGACTTACCCTGATCCGATT 282 ||| ||||| | ||| || || |||||| | |||||| |||||| ||||| Sbjct 4172 TTC--CCATCAGCTACGCATCTCTGCCTCACCTTAGGGGCCGACTCACCCTGCGCCGATG 4115 Query 283 AGCGGTGATCAGGAAACCTTAGTCTTTCGGCGAGGGGGTTTCCCACCCCC 332 | || || ||||||||||| | ||||||||||||| | || ||| ||| Sbjct 4114 AACGTTGCGCAGGAAACCTTGGGCTTTCGGCGAGGGAGCTTTTCACTCCC 4065 >seq3065 Length=3725 Score = 75.2 bits (82), Expect = 2e-11 Identities = 59/71 (83%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 259 GACCCGACTTACCCTGATCCGATTAGCGGTGATCAGGAAACCTTAGTCTTTCGGCGAGGG 318 |||| | || ||||||||||||||| || |||||||||| |||||| |||||||||| Sbjct 2790 GACCGGGCTAACCCTGATCCGATTAACGTTGATCAGGAACCCTTAGACTTTCGGCGATAA 2849 Query 319 GGTTTCCCACC 329 ||||| |||| Sbjct 2850 GGTTTTTCACC 2860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 959910883200