Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= AAMG01000140.1 Length=336 Score E Sequences producing significant alignments: (Bits) Value seq3065 307 2e-81 seq4110 298 1e-78 seq1601 152 1e-34 seq2252 141 2e-31 >seq3065 Length=3725 Score = 307 bits (340), Expect = 2e-81 Identities = 271/332 (82%), Gaps = 11/332 (3%) Strand=Plus/Minus Query 6 CGAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTG 65 ||||||| ||||||||||||| | |||| || |||| ||||||||| |||||| || Sbjct 3650 CGAGCAGCGGGGTGAAATAGAACTTGAAACCATGCGCTTACAAGCGGACGGAGC---GTA 3594 Query 66 ATTCGGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGT 125 | |||||| ||||||||||||||||||||||||||||||| || || || |||| Sbjct 3593 A----GTGACGTCGTGCCTTTTGCATAATGAGCCTACGAGTTACG-GTTACTGGCAAGGT 3539 Query 126 TAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGT 185 ||| | | || | | |||||||| ||||||||| || || ||||||| ||| || Sbjct 3538 TAATGTTTGAAGAACAGG-AGCCGAAGCGAAAGCGAGTCTGAATAGGGCGATTAGTCAGT 3480 Query 186 GGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGC-GGTAACGCG 244 ||| |||||||||||| | ||||||||||| | |||||||||| ||| |||||| | Sbjct 3479 GGCTGTAGACGCGAAACTTGGTGATCTACCCTTGGTCAGGTTGAAG-CGCTGGTAACACA 3421 Query 245 TGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTG 304 | ||||||||||||||||||||||||||||||||||||||||| | ||||||||||| Sbjct 3420 TCGTGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGAACTGAGGGTAGGGGTG 3361 Query 305 AAAGGCCAATCAAACTGGGAAATAGCTCGTAC 336 ||||||||||||||||| |||||||||||||| Sbjct 3360 AAAGGCCAATCAAACTGAGAAATAGCTCGTAC 3329 >seq4110 Length=2169 Score = 298 bits (330), Expect = 1e-78 Identities = 265/326 (81%), Gaps = 9/326 (3%) Strand=Plus/Minus Query 15 GGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCG---AGTGATTCGG 71 |||||||||||| |||||| || ||||||||||||||||||||| |||| || Sbjct 1409 GGGTGAAATAGATCCTGAAACCATACGCCTACAAGCGGTCGGAGCCCTTAAGTGG---GG 1353 Query 72 TGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGGG 131 ||||||||||||||||||||||||||||||||||||| ||| | || ||| |||| | Sbjct 1352 TGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAA-CGTTGCTGGCAAGGATAAGTG 1294 Query 132 CTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACG-AGTTGGTGGCGC 190 || || | || | ||| || ||||||||| || || |||||| ||| || | | Sbjct 1293 TTTAAGCCACGG-ATCCGTAGCGAAAGCGAGTCTGAATAGGGCGCTTTAGTCAGTAGTGT 1235 Query 191 TAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGG 250 ||||||||||||| ||||||||||||| | ||||||||||| | |||||| | ||| Sbjct 1234 TAGACGCGAAACCGTGTGATCTACCCATGGGCAGGTTGAAGCTGTGGTAACACACAGTGG 1175 Query 251 AGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGC 310 |||||||||||||| |||||||||||| |||||||||| | ||||||||||||||||| Sbjct 1174 AGGACCGAACCGGTTGACGTTGAAAAGTCTTCGGATGACCTGTGGGTAGGGGTGAAAGGC 1115 Query 311 CAATCAAACTGGGAAATAGCTCGTAC 336 |||||||||| ||||||||||||||| Sbjct 1114 CAATCAAACTCGGAAATAGCTCGTAC 1089 >seq1601 Length=10388 Score = 152 bits (168), Expect = 1e-34 Identities = 231/325 (71%), Gaps = 9/325 (3%) Strand=Plus/Plus Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCG 70 ||||| |||||||||| |||||| ||| || ||||| | || |||||| || | | Sbjct 3286 AGGGGAGTGAAATAGATCCTGAAACCGTATGCATACAAACAGTGGGAGCCTCGTAAGG-G 3344 Query 71 GTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGG 130 ||||| |||| ||||||| |||||| | | ||| ||| ||| || || |||| Sbjct 3345 GTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTACAT-TCAGTGGCAAGCTTAACC 3403 Query 131 GCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACG-AGTTGGTGGCG 189 | | || || || || |||| |||| | || ||||||| ||| | ||| Sbjct 3404 GATAGGGG------AGGCGTAGAGAAATCGAGTCCGAATAGGGCGAATTAGTCGCTGGGT 3457 Query 190 CTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATG 249 ||||| ||||||| |||||||| ||| | |||| ||||| || ||||| || || Sbjct 3458 GTAGACCCGAAACCAAGTGATCTATCCATGGCCAGGATGAAGGTGCCGTAACAGGTACTG 3517 Query 250 GAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGG 309 |||| ||||||| ||| |||||||| ||| |||||| | || ||||||||||||| Sbjct 3518 GAGGTCCGAACCCACAAATGTTGAAAAATTTGGGGATGAGCTGTGGATAGGGGTGAAAGG 3577 Query 310 CCAATCAAACTGGGAAATAGCTCGT 334 | || |||||| ||| |||||| || Sbjct 3578 CTAAACAAACTTGGAGATAGCTGGT 3602 >seq2252 Length=6434 Score = 141 bits (156), Expect = 2e-31 Identities = 222/309 (72%), Gaps = 8/309 (3%) Strand=Plus/Minus Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAG-CCGAGTGATTC 69 ||||| |||||||||| | |||| ||| |||| ||||||| || |||| || | | | Sbjct 3087 AGGGGAGTGAAATAGA-CGTGAAACCGTGCGCTTACAAGCAGTTGGAGCCCTACTTAGAG 3029 Query 70 GGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAG 129 |||||| |||| ||| ||| | |||||||| ||||||| | || ||||||||||||| Sbjct 3028 GGTGACAGCGTACCTGTTGAAGAATGAGCCGCCGAGTTA-TGGTACACAGCGAGGTTAAG 2970 Query 130 GGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGA--CGAGTTGGTGG 187 | | || |||||||| ||||||||| || || ||||||| ||||| | Sbjct 2969 TCGTAAATAGACG-GAGCCGAAGCGAAAGCGAGTCTGAATAGGGCGATTTTAGTTGTGTG 2911 Query 188 CGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGC-GGTAACGCGTG 246 | ||||| |||| || | |||||| ||| | |||| ||||| ||| ||| || | Sbjct 2910 CTGTAGACCCGAACCCAGGCGATCTAGCCATGGCCAGGATGAAG-CGCAGGTGACACTGC 2852 Query 247 ATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAA 306 |||||| ||||||| || |||||||| || |||||| | || ||| |||||| Sbjct 2851 GTGGAGGTCCGAACCCACGAATGTTGAAAAATTCGGGGATGAGCTGTGGCTAGCGGTGAA 2792 Query 307 AGGCCAATC 315 | |||||| Sbjct 2791 ATTCCAATC 2783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 972709694976