Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= AAMG01000370.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq4110 172 5e-41 seq3583 111 2e-22 seq1601 107 2e-21 >seq4110 Length=2169 Score = 172 bits (190), Expect = 5e-41 Identities = 143/173 (83%), Gaps = 5/173 (3%) Strand=Plus/Minus Query 8 GGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67 || |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| Sbjct 1904 GGGGGATGCCTAGGCTCTCAGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTGCGGG 1845 Query 68 GATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCCGATATATTGGAGA 127 || |||||| || ||||||||| |||||||||||||||||||||| | || || || Sbjct 1844 GACGGGCACACACCGATTGATCCGCAGATATCCGAATGGGGCAACCCAGTGTACTGAAGG 1785 Query 128 TATATCATAACGCTAGGCGTTAGGCGAACGTGGGGAACTGAAACATCTAAGTA 180 || || | || |||| ||||||| | ||||||||||||||||||| Sbjct 1784 TACATTA-CCCGATAGG----GGGCGAACCCGCTGAACTGAAACATCTAAGTA 1737 >seq3583 Length=2760 Score = 111 bits (122), Expect = 2e-22 Identities = 132/175 (75%), Gaps = 8/175 (5%) Strand=Plus/Plus Query 8 GGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67 ||||||||||| || ||| |||||||||||||||||| |||||||||| |||| | | Sbjct 2434 GGTGGATGCCTTGGGTCTGAGAGGCGAAGAAGGACGTGGTAAGCTGCGATAAGCCAGGAA 2493 Query 68 GATTGGCACATACGAATT-GATCCGTAGATATCCGAATGGGGCAACCCGATATATTGGAG 126 || ||||| | | ||| |||| | ||| |||||||||| ||||||| || ||| || Sbjct 2494 GAGCTGCACACAAGCATTATATCCCTGGATTTCCGAATGGGTCAACCCGGTACGTTGAAG 2553 Query 127 ATATATCATAACGCTAGGCGTTAG-GCGAACGTGGGGAACTGAAACATCTAAGTA 180 | ||||| || || || || ||| || ||||||||||||||||||| Sbjct 2554 ACGTATCA-CTCGAAAG-----AGAGCCAACCCGGAGAACTGAAACATCTAAGTA 2602 >seq1601 Length=10388 Score = 107 bits (118), Expect = 2e-21 Identities = 93/114 (82%), Gaps = 1/114 (1%) Strand=Plus/Plus Query 2 GCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGC 61 ||| | ||||||||||| ||| | |||||| ||||||||||||| ||||||||||| Sbjct 2815 GCATATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTGATAGCCTGCGAAAAGC 2874 Query 62 TACGGGGA-TTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC 114 | |||||| ||||| ||| | |||||||| |||| ||||||||||| ||||| Sbjct 2875 TTCGGGGAGCTGGCAAATAAGCTTTGATCCGGAGATGTCCGAATGGGGAAACCC 2928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476757121823