Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq2252 325 1e-86 seq1601 322 1e-85 seq3583 257 4e-66 seq6228 199 1e-48 seq1466 107 5e-21 >seq2252 Length=6434 Score = 325 bits (360), Expect = 1e-86 Identities = 313/398 (79%), Gaps = 4/398 (1%) Strand=Plus/Minus Query 15 AAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAATCG 74 ||||||||||||||| |||||||||||||||||||| ||| |||||||||||||| ||| Sbjct 5161 AAGCACCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGAGGGTGCAAGCGTTGTTCG 5102 Query 75 GAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCCCCGGG 134 ||||||||||||||||||||| || |||||| | |||| | ||| ||| || || Sbjct 5101 GAATTACTGGGCGTAAAGCGTACGTAGGCGGCGGATTAAGTCGAATGTTAAAGCCTGAGG 5042 Query 135 CTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAGGGGGGTGGAAT 194 || ||||| || |||||| | |||| | |||||| ||| ||||| ||||||| Sbjct 5041 CTCAACCTCAGAGATGCATTCGATACTGGTCTGCTAGAGGGTGATAGAGGAAAGTGGAAT 4982 Query 195 TCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGCAGCCC 254 ||| ||||||| ||||||||||||||||| ||||||||| || | |||||||| | Sbjct 4981 TCCGAGTGTAGCGGTGAAATGCGTAGATATTCGGAGGAACATCAGTAGCGAAGGCGACTT 4922 Query 255 CCTGGGATAACAC-TGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACC 313 ||||| | |||| ||||||| | | ||||||||||||||||||||| |||||||||||| Sbjct 4921 TCTGGG-TCACACCTGACGCTGAGGTACGAAAGCGTGGGGAGCAAACGGGATTAGATACC 4863 Query 314 CTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGATTTACTTCCTTG--GTA 371 | ||||||||||||| |||||||| |||| ||| | || | | || || || Sbjct 4862 CCGGTAGTCCACGCCGTAAACGATGGATGCTAGGTGTAGCGGGTATCGACCCCTGCTGTG 4803 Query 372 ACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 |||||||||||||| ||| ||||||||||| ||| Sbjct 4802 CCGTAGCTAACGCGTTAAGCATCCCGCCTGGGGAGTAC 4765 >seq1601 Length=10388 Score = 322 bits (356), Expect = 1e-85 Identities = 268/328 (82%), Gaps = 0/328 (0%) Strand=Plus/Plus Query 10 AGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTT 69 |||| |||| |||||||||| |||||||||||||||||||||||| |||| || |||||| Sbjct 894 AGAAGAAGCCCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGGGCTAGCGTT 953 Query 70 AATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCC 129 ||||||||||||||||||||||| || |||||| | | |||| |||| ||||||||| Sbjct 954 GTTCGGAATTACTGGGCGTAAAGCGCACGTAGGCGGATATTTAAGTCAGGGGTGAAATCC 1013 Query 130 CCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAGGGGGGT 189 | | ||| ||| |||| ||| |||| |||| || |||| || ||||| || Sbjct 1014 CAGAGCTCAACTCTGGAACTGCCTTTGATACTGGGTATCTTGAGTATGGAAGAGGTAAGT 1073 Query 190 GGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGC 249 |||||||| |||||| ||||||| ||||||||| |||||||||||| |||||||||| Sbjct 1074 GGAATTCCGAGTGTAGAGGTGAAATTCGTAGATATTCGGAGGAACACCAGTGGCGAAGGC 1133 Query 250 AGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGA 309 || |||| | ||||||||| | | ||||||||||||||||||||||||||||| Sbjct 1134 GGCTTACTGGTCCATTACTGACGCTGAGGTGCGAAAGCGTGGGGAGCAAACAGGATTAGA 1193 Query 310 TACCCTGGTAGTCCACGCCCTAAACGAT 337 ||||||||||||||||||| |||||||| Sbjct 1194 TACCCTGGTAGTCCACGCCGTAAACGAT 1221 >seq3583 Length=2760 Score = 257 bits (284), Expect = 4e-66 Identities = 253/327 (77%), Gaps = 0/327 (0%) Strand=Plus/Plus Query 11 GAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTA 70 ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| Sbjct 588 GAATAAGCACCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGGTGCAAGCGTTA 647 Query 71 ATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCCC 130 |||| | | |||| ||||| ||||| ||| || | ||||| ||| |||||||| Sbjct 648 TCCGGATTCATTGGGTTTAAAGGGTGCGTAGGTGGGTTAGTAAGTCAGTGGTGAAATCTT 707 Query 131 CGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAGGGGGGTG 190 || ||||||| || || ||| ||| ||| | || || | | |||| | | Sbjct 708 CGAGCTTAACTCGGAAACTGCCATTGATACTATTAGTCTTGAATATTGTGGAGGTTAGCG 767 Query 191 GAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGCA 250 |||| | |||||| ||||||||| |||||||| |||||||||| ||||||||| Sbjct 768 GAATATGTCATGTAGCGGTGAAATGCTTAGATATGACATAGAACACCAATTGCGAAGGCA 827 Query 251 GCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGAT 310 || || | | |||| || | ||||||||||||||||| ||||||||||||||| Sbjct 828 GCTGGCTACACATATATTGACACTGAGGCACGAAAGCGTGGGGATCAAACAGGATTAGAT 887 Query 311 ACCCTGGTAGTCCACGCCCTAAACGAT 337 |||||||||||||||||||||||| || Sbjct 888 ACCCTGGTAGTCCACGCCCTAAACTAT 914 >seq6228 Length=1310 Score = 199 bits (220), Expect = 1e-48 Identities = 227/305 (74%), Gaps = 0/305 (0%) Strand=Plus/Plus Query 9 AAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGT 68 ||||||||| | ||||||||| |||||||||||||||||||||||| ||| | ||||||| Sbjct 1006 AAGAATAAGGATCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGATCCAAGCGT 1065 Query 69 TAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATC 128 || |||||| | |||| ||||| || || |||||| |||||| ||| |||||||| Sbjct 1066 TATCCGGAATCATTGGGTTTAAAGGGTCCGTAGGCGGCCCTGTAAGTCAGCGGTGAAATC 1125 Query 129 CCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAGGGGGG 188 || ||| ||| || || ||| ||| |||||| | || || | || | Sbjct 1126 TCCCAGCTCAACTGGGAAACTGCCGTTGATACTGCAGGGCTTGAATCGCCGGGAAGTAAC 1185 Query 189 TGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGG 248 | |||| ||||||| ||||||||| ||||||| |||| |||||| ||||||| Sbjct 1186 TAGAATATGTAGTGTAGCGGTGAAATGCTTAGATATTACATGGAATACCAATTGCGAAGG 1245 Query 249 CAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAG 308 ||| || | | ||||||| ||| ||||||||||||||||| ||||||||||| Sbjct 1246 CAGGTTACTACCAGTGGATTGACGCTGATGGACGAAAGCGTGGGGAGCGAACAGGATTAG 1305 Query 309 ATACC 313 ||||| Sbjct 1306 ATACC 1310 >seq1466 Length=17362 Score = 107 bits (118), Expect = 5e-21 Identities = 234/344 (68%), Gaps = 16/344 (5%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTAC--GTGCCAGCAGCCGCGGTAATACGTAGGGT 60 ||| | || || ||| |||||||| ||| ||||||||||||||||||||||| || Sbjct 11883 TACTTAAAAAAGAAGTTCCGGCTAA-TACCCGTGCCAGCAGCCGCGGTAATACGGGAGGA 11941 Query 61 GCAAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGAC--AG 118 || ||| ||| ||||||| | | ||||||||| || | ||| |||| | |||| | Sbjct 11942 GCGAGCATTATTCGGAATGATTAGGCGTAAAGAGTTTGTAGGTGGTTTTTTAAGTTGAAA 12001 Query 119 GTGTGAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTG----ACTGCACGACTAGAGT 174 | |||| | || ||| | | ||||| | |||| |||||||| Sbjct 12002 GAAACAAATTAAAG--CTCAACTTTATA----CATTTTTTCAAAACTGATAAACTAGAGT 12055 Query 175 GTGTC-AGAGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAA 233 | ||||| ||||||| | || || | |||| || |||| | ||||| Sbjct 12056 ATAAATAGAGGATAATGGAATTTCTATTGGAGTGATAAAATATGTTGATAATAGAAGGAA 12115 Query 234 CACCAATGGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGG 293 | | || ||||||||| ||||| | |||||| || | |||||||| |||| Sbjct 12116 GATCTATAGCGAAGGCAATTATCTGGGTATATACTGACACTGAGAAACGAAAGCTTGGGT 12175 Query 294 AGCAAACAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 ||| ||| ||||||||||||| ||||||||| ||| |||||||| Sbjct 12176 AGCGAACGGGATTAGATACCCCGGTAGTCCATGCCGTAAACGAT 12219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1289480286432