Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= AAMG01000599.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq1601 154 1e-35 seq4110 95.1 1e-17 seq2252 82.4 7e-14 seq3065 80.6 3e-13 seq2933 78.8 9e-13 seq1711 75.2 1e-11 >seq1601 Length=10388 Score = 154 bits (170), Expect = 1e-35 Identities = 119/139 (86%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 21 AGGGACTTGCTCCGTAAGC-TCATGCCGGTCGAAGATACCAGGCCGCTGCGACTGTTTAT 79 || ||||||||| |||| | ||| ||| | || | ||| |||||||||||||| Sbjct 4509 AGAGACTTGCTCTTGAAGCGTGATGG-GGTTGCAGTGAAAAGGTGGCTGCGACTGTTTAA 4567 Query 80 TAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGACGCCTGCCCGGT 139 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4568 TAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGACGCCTGCCCGGT 4627 Query 140 GCCGGAAGGTTAATTGATG 158 || ||||| |||| ||||| Sbjct 4628 GCTGGAAGATTAAATGATG 4646 >seq4110 Length=2169 Score = 95.1 bits (104), Expect = 1e-17 Identities = 72/85 (85%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGA 127 |||||||||||| |||||||||| ||||||||| || ||| || |||||||| ||| Sbjct 152 GCGACTGTTTATCAAAAACACAGGGCTCTGCAAAATCGTAAGATGAAGTATAGGGCCTGA 93 Query 128 CGCCTGCCCGGTGCCGGAAGGTTAA 152 | |||||||||||| |||||||||| Sbjct 92 CACCTGCCCGGTGCTGGAAGGTTAA 68 >seq2252 Length=6434 Score = 82.4 bits (90), Expect = 7e-14 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 60 AGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATA 119 ||||| ||||||||||| |||||||||| ||||| || || ||| || ||||| Sbjct 1810 AGGCCCAAGCGACTGTTTAACAAAAACACAGGTGTCTGCTAAGCCGCAAGGCGATGTATA 1751 Query 120 GGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 || |||||||||||| ||||||||||||||| Sbjct 1750 GGCGCTGACGCCTGCCCAGTGCCGGAAGGTTAA 1718 >seq3065 Length=3725 Score = 80.6 bits (88), Expect = 3e-13 Identities = 67/82 (82%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 71 ACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGACGC 130 |||||||| |||||||||| | ||||||| |||||| ||||||||| | ||| | Sbjct 2471 ACTGTTTAACAAAAACACAGGGCCCTGCAAAATCGAAAGATGACGTATAGAGCCTGATAC 2412 Query 131 CTGCCCGGTGCCGGAAGGTTAA 152 ||||||||||| |||||||||| Sbjct 2411 CTGCCCGGTGCTGGAAGGTTAA 2390 >seq2933 Length=8488 Score = 78.8 bits (86), Expect = 9e-13 Identities = 69/86 (80%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 67 TGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTG 126 |||||||||||| ||||||| || ||||||| || | || || ||||||||| || Sbjct 1367 TGCGACTGTTTAATAAAAACTTAGGACTCTGCTAAATGGTAACATGATGTATAGGGTCTG 1308 Query 127 ACGCCTGCCCGGTGCCGGAAGGTTAA 152 || |||||||||||| ||||| |||| Sbjct 1307 ACACCTGCCCGGTGCTGGAAGATTAA 1282 >seq1711 Length=9496 Score = 75.2 bits (82), Expect = 1e-11 Identities = 68/86 (79%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 67 TGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTG 126 |||||||||||| ||||||| || ||||||| || | || | ||||||||| || Sbjct 1367 TGCGACTGTTTAATAAAAACTTAGGACTCTGCTAAATGGTAACATGTTGTATAGGGTCTG 1308 Query 127 ACGCCTGCCCGGTGCCGGAAGGTTAA 152 || |||||||||||| ||||| |||| Sbjct 1307 ACACCTGCCCGGTGCTGGAAGATTAA 1282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476757121823