Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq2252 351 2e-94 seq3065 313 5e-83 seq2933 250 5e-64 seq1711 237 3e-60 seq1601 219 9e-55 seq4536 201 2e-49 seq4110 194 4e-47 seq2477 152 1e-34 seq1241 150 4e-34 seq380 96.9 7e-18 >seq2252 Length=6434 Score = 351 bits (388), Expect = 2e-94 Identities = 303/374 (81%), Gaps = 31/374 (8%) Strand=Plus/Plus Query 9 ATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTTAC 68 |||||||| | | | ||||||||||||| | | | ||||||| |||||||||||||| Sbjct 1536 ATCTTCACAGCCAATCCAATTTCACCGAGCCCCTCGCCGAGACAGCGCCCAAATCGTTAC 1595 Query 69 GCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATA 128 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1596 GCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATA 1655 Query 129 GTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTC-GATTGCTCTAACAGATCC- 186 ||||||||||||||| || ||||||| |||| | ||| || |||| |||| | | |||| Sbjct 1656 GTTACGGCCGCCGTTCACCGGGGCTTCAGTTAAATGCGTCAGATTACTCTTA-ACATCCT 1714 Query 187 -CCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCA 245 |||||||||||| |||| |||||||||||||| ||||||||||| |||||| ||||||| Sbjct 1715 TCCTTAACCTTCCGGCACTGGGCAGGCGTCAGCGCCTATACATCGCCTTGCGGCTTAGCA 1774 Query 246 GAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCC------TG-TC 298 || ||||||||||||| ||||||||||||||||||| | | ||||| || || || Sbjct 1775 GACACCTGTGTTTTTGTTAAACAGTCGCTTGGGCCTCTCCGCTGCGACCACCTCATGCTC 1834 Query 299 ATAGA-CA-------------------GGCACCCCTTCTCCCTAAGTTACGGGGTCATTT 338 ||| || ||||| |||||| || ||| ||| | ||||||| Sbjct 1835 CGAGAGCAAGTCTCTTCACACTACCGTGGCACTCCTTCTTCCAAAGGTACAGAGTCATTT 1894 Query 339 TGCCGAGTTCCTTA 352 |||||||||||||| Sbjct 1895 TGCCGAGTTCCTTA 1908 >seq3065 Length=3725 Score = 313 bits (346), Expect = 5e-83 Identities = 281/349 (81%), Gaps = 3/349 (1%) Strand=Plus/Plus Query 5 CGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCG 64 |||||||||||||| | ||||||||||||||| || | |||||||||||||| |||| Sbjct 2204 CGGCATCTTCACCGCTACTACAATTTCACCGAGCTCATGGCTGAGACAGTGCCCAGATCG 2263 Query 65 TTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT 124 |||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 2264 TTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT 2323 Query 125 TATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGA-TTGC-TCTAACAG 182 |||||||||||||||||||||||||||||| ||| |||| || |||| || |||| Sbjct 2324 TATAGTTACGGCCGCCGTTTACTGGGGCTTCAGTCAGGAGCTTTGACTTGCGTCGAACAC 2383 Query 183 ATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTA 242 ||||||||||||||||||||||||| |||| |||||| || |||| ||| || Sbjct 2384 CCTTCCTTAACCTTCCAGCACCGGGCAGGTATCAGGCTCTATACGTCATCTTTCGATTTT 2443 Query 243 GCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTCATAG 302 |||| |||||||||||| |||||||| | ||| || || ||| | ||| | || Sbjct 2444 GCAGGGCCCTGTGTTTTTGTTAAACAGTTGGTTGAACCATTTTACTGAGACCTACCGAAG 2503 Query 303 ACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTT 351 ||| | | || |||| ||||||| | ||| |||||| |||||||| Sbjct 2504 -TAGGTATGCTTTATCCCGAAGTTACAGCATCAATTTGCCTAGTTCCTT 2551 >seq2933 Length=8488 Score = 250 bits (276), Expect = 5e-64 Identities = 272/362 (75%), Gaps = 13/362 (4%) Strand=Plus/Plus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | | | ||| ||||| |||||||| | ||||||| | | ||||| Sbjct 1109 GCATCTTCACGGATAATTCAAATTCACTGAGTCTATATTGGAGACAGCGGGGATGTCGTT 1168 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 || || ||| ||| |||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1169 ACACCATTCATGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTCA 1228 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATCC 186 ||||||||||||||||||||||| ||| || | ||| | |||| ||| Sbjct 1229 GAGTTACGGCCGCCGTTTACTGGGACTTCCATTTAATGCGT---------AAACATTTCC 1279 Query 187 CCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAG 246 |||| |||||||||||||||||| ||||| |||||||||| | || | | ||||||| Sbjct 1280 TTTTAATCTTCCAGCACCGGGCAGGTGTCAGACCCTATACATCATGTTACCATTTAGCAG 1339 Query 247 AAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCC----TGTCATAG 302 | ||| |||||| ||||||||||| |||||| | || || | | | | Sbjct 1340 AGTCCTAAGTTTTTATTAAACAGTCGCAACCCCCTATTTTGTGACACCTAATTTTTAAAA 1399 Query 303 ACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACAATAGTTC 362 ||| || || |||| ||||||| |||||||||||||||||||| | ||||||| Sbjct 1400 TTAGGTACTTTTTATCCCGAAGTTACAAAGTCATTTTGCCGAGTTCCTTCAATATAGTTC 1459 Query 363 TC 364 || Sbjct 1460 TC 1461 >seq1711 Length=9496 Score = 237 bits (262), Expect = 3e-60 Identities = 270/362 (75%), Gaps = 13/362 (4%) Strand=Plus/Plus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||| ||| | | | ||| ||||| |||||||| | ||||||| | | ||||| Sbjct 1109 GCATCTGCACGGATAATTCAAATTCACTGAGTCTATATTGGAGACAGCGGGGATGTCGTT 1168 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 || || ||| ||| |||||||||||||||||||||||||||||||||||||||||| | | Sbjct 1169 ACACCATTCATGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCATCA 1228 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATCC 186 ||||||||||||||||||||||| ||| || | ||| | |||| ||| Sbjct 1229 GAGTTACGGCCGCCGTTTACTGGGACTTCCATTTAATGCGT---------AAACATTTCC 1279 Query 187 CCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAG 246 |||| |||||||||||||||||| ||||| |||||||| | | || | | ||||||| Sbjct 1280 TTTTAATCTTCCAGCACCGGGCAGGTGTCAGACCCTATACAACATGTTACCATTTAGCAG 1339 Query 247 AAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCC---TGTCATAGA 303 | ||| |||||| ||||||||||| |||||| | || || | | || | Sbjct 1340 AGTCCTAAGTTTTTATTAAACAGTCGCAACCCCCTATTTTGTGACACCTAATTTTTTAAA 1399 Query 304 -CAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACAATAGTTC 362 ||| || || |||| ||||||| |||||||||||||||||||| | ||||||| Sbjct 1400 TTAGGTACTTTTTATCCCGAAGTTACAAAGTCATTTTGCCGAGTTCCTTCAATATAGTTC 1459 Query 363 TC 364 || Sbjct 1460 TC 1461 >seq1601 Length=10388 Score = 219 bits (242), Expect = 9e-55 Identities = 210/267 (79%), Gaps = 9/267 (3%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| ||| ||| ||| | ||||| | ||||||||| |||||| Sbjct 4813 GCATCTTCACAAACATTTCAACTTCGCTGAGTCCCGAGAGGAGACAGTGTGGCCATCGTT 4754 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4753 ACGCCATTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 4694 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATCC 186 |||||||||||||||||||||||| ||| | | | || |||| | | || | Sbjct 4693 TAGTTACGGCCGCCGTTTACTGGGACTTCAATCAAGAGC-----TTGC---ACCCCAT-C 4643 Query 187 CCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAG 246 |||| ||||||||||||||||||||||| ||||||| || ||| || || |||| Sbjct 4642 ATTTAATCTTCCAGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAG 4583 Query 247 AAACCTGTGTTTTTGGTAAACAGTCGC 273 | |||||||||| ||||||||||| Sbjct 4582 AGTGCTGTGTTTTTATTAAACAGTCGC 4556 >seq4536 Length=1895 Score = 201 bits (222), Expect = 2e-49 Identities = 134/149 (90%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 2 ACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAA 61 |||| |||||||||| |||| | ||||||||| |||||||| | ||||||| | || Sbjct 149 ACCCCGCATCTTCACGGGGAATTCAATTTCACTGAGTCTATGTTGGAGACAGCGGGGAAG 90 Query 62 TCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 121 |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 89 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 30 Query 122 CGTTATAGTTACGGCCGCCGTTTACTGGG 150 ||||||||||||||||||||||||||||| Sbjct 29 CGTTATAGTTACGGCCGCCGTTTACTGGG 1 >seq4110 Length=2169 Score = 194 bits (214), Expect = 4e-47 Identities = 183/232 (79%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 122 CGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACA 181 ||||||||||||||||||||||||||||||||| | |||| |||||| ||||| Sbjct 1 CGTTATAGTTACGGCCGCCGTTTACTGGGGCTTCAATTCAATGCTTCTCCGAAGATAACA 60 Query 182 GATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTT 241 ||| |||||||||||||||||||||||| ||||| ||||||| || |||| ||| || Sbjct 61 TCTCCTCTTAACCTTCCAGCACCGGGCAGGTGTCAGGCCCTATACTTCATCTTACGATTT 120 Query 242 AGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTCATA 301 ||||| |||||||||||| ||||||||||| ||| ||| ||| |||||||| | Sbjct 121 TGCAGAGCCCTGTGTTTTTGATAAACAGTCGCCTGGACCTCTTCACTGCGGCCCCGATTG 180 Query 302 GAC-AGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 | ||| || ||||||| ||||||| || |||||||| | ||||||| Sbjct 181 CTCGGGGCGACCTTTCTCCCGAAGTTACAGGTCTATTTTGCCTAATTCCTTA 232 >seq2477 Length=5561 Score = 152 bits (168), Expect = 1e-34 Identities = 117/139 (84%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | | | ||| ||||| |||||||| | ||||||||| | ||||| Sbjct 4591 GCATCTTCACGGATAATTCAAATTCACTGAGTCTATATTGGAGACAGTGGGGATGTCGTT 4650 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 || || ||| ||| |||||||||||||||||||||||||||||||| ||||||||||| | Sbjct 4651 ACACCATTCATGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTATCTTAGGACCGTCA 4710 Query 127 TAGTTACGGCCGCCGTTTA 145 |||||||||||||||||| Sbjct 4711 GAGTTACGGCCGCCGTTTA 4729 >seq1241 Length=26226 Score = 150 bits (166), Expect = 4e-34 Identities = 122/148 (82%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | | | ||| ||||| ||||||| | ||||||||| | ||||| Sbjct 22425 GCATCTTCACGGATAATTCAAATTCACTAAGTCTATATTGGAGACAGTGGGGATGTCGTT 22366 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 || || ||| ||| |||||||||||||||||||| || |||||||||||||||||||| | Sbjct 22365 ACACCATTCATGCAGGTCGGAACTTACCCGACAATGAGTTTCGCTACCTTAGGACCGTCA 22306 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTT 154 ||||||||| ||||||||||||| ||| Sbjct 22305 GAGTTACGGCTGCCGTTTACTGGGACTT 22278 >seq380 Length=42667 Score = 96.9 bits (106), Expect = 7e-18 Identities = 136/191 (71%), Gaps = 4/191 (2%) Strand=Plus/Plus Query 178 AACAGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCG 237 |||| ||| |||| ||||||||||||||||| |||||| |||||||||| | || | Sbjct 9930 AACATTTCCTTTTAATCTTCCAGCACCGGGCAGACGTCAGACCCTATACATCATGTTACC 9989 Query 238 ACTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGC---- 293 | |||||||| ||| |||||| |||||||||| |||||| | || | Sbjct 9990 ATTTAGCAGAGCCCTAAGTTTTTATCAAACAGTCGCAACCCCCTATTTTGTGACACTTAA 10049 Query 294 CTGTCATAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAA 353 || | | || || || |||| ||||||| |||||||||||||||||||| Sbjct 10050 CTTTTTAAATTTGGTACTTTTTATCCCGAAGTTACAAAGTCATTTTGCCGAGTTCCTTCG 10109 Query 354 CAATAGTTCTC 364 ||||||||| Sbjct 10110 ATATAGTTCTC 10120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062301377408