Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq2252 565 7e-159 seq1601 531 2e-148 seq3583 367 4e-99 seq1466 232 2e-58 seq8583 125 2e-26 seq3808 98.7 3e-18 seq8881 96.9 1e-17 seq256 86.0 2e-14 seq815 84.2 7e-14 seq692 77.0 1e-11 >seq2252 Length=6434 Score = 565 bits (626), Expect = 7e-159 Identities = 426/497 (86%), Gaps = 3/497 (1%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| |||||||||||||||||||||||| |||||||||||||||||| || Sbjct 4767 TACGCACGCAAGTGTGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGGAT 4708 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| |||||||||| |||||||||| |||||||| | || |||| Sbjct 4707 GTGGTTTAATTCGACGCAACGCGAAAAACCTTACCAGGGCTTGACATGCCGCGAATCCTC 4648 Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAG 180 | || | ||||| | || |||||| || | ||||||| ||||||| ||||||||| Sbjct 4647 TTGAAAGAGAGGGGTGCC-TTCGGGA-ACGCGGACACAGGTGGTGCATGGCTGTCGTCAG 4590 Query 181 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGC 240 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 4589 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTCGGATTTAGTTGC 4530 Query 241 CATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGAC 300 ||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||| Sbjct 4529 CATCATTAAGTTGGGAACTCTAGATCGACTGCCGGTGACAAACCGGAGGAAGGTGGGGAC 4470 Query 301 GACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGAC-AATA 359 |||||||| ||||||||||||||| | |||||||||||||| ||||||||| | ||| Sbjct 4469 GACGTCAAGTCATCATGCCCCTTACGCCCTGGGCTACACACGTCCTACAATGGCCGGATA 4410 Query 360 CAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATT 419 || ||||||||||| ||||||||| |||| ||||||||||| | |||||||||||||| Sbjct 4409 CAGAGGGCAGCGAAGCCGCGAGGTGAAGCGAATCCCATAAAACCGGTCTCAGTTCGGATT 4350 Query 420 GTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCATGCTA 479 | || ||| |||||| || |||||| |||||||||||||| || ||||||||||||| Sbjct 4349 GCAGGCTGAAACTCGCCTGCATGAAGTCGGAATCGCTAGTAAACGCAGATCAGCATGCTG 4290 Query 480 CGGTGAATACGTTCCCG 496 || |||||||||||||| Sbjct 4289 CGTTGAATACGTTCCCG 4273 >seq1601 Length=10388 Score = 531 bits (588), Expect = 2e-148 Identities = 419/497 (84%), Gaps = 4/497 (1%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| || |||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1291 TACGGTCGCAAGATTAAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT 1350 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 ||||||||||||||||||||||| |||||||||||| |||||||| | || |||| Sbjct 1351 GTGGTTTAATTCGAAGCAACGCGCAGAACCTTACCAGCCCTTGACATGCCGCGAATCCTC 1410 Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAG 180 | || | ||||| | || |||||| || | ||||||| ||||||| ||||||||| Sbjct 1411 TTGAAAGAGAGGGGTGCC-TTCGGGA-ACGCGGACACAGGTGCTGCATGGCTGTCGTCAG 1468 Query 181 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGC 240 ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct 1469 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTCGCCCCTAGTTGC 1528 Query 241 CATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCG-GAGGAAGGTGGGGA 299 || |||| |||||||||||||||| |||||||||||| || ||| |||||||||||||| Sbjct 1529 CAGCATTCAGTTGGGCACTCTAAGGGGACTGCCGGTGATAAGCCGAGAGGAAGGTGGGGA 1588 Query 300 CGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATA 359 |||||||| || ||||| |||||| | |||||||||||||||||||||||| | Sbjct 1589 TGACGTCAAGTCCTCATGGCCCTTACGGGCTGGGCTACACACGTGCTACAATGGTGGTGA 1648 Query 360 CAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATT 419 || ||||||||| || |||| ||| ||| |||| | |||| |||||||||||||| Sbjct 1649 CAGTGGGCAGCGAGACAGCGATGTCGAGCTAATCTCCAAAAG-CCATCTCAGTTCGGATT 1707 Query 420 GTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCATGCTA 479 | | |||||||||||| | |||||| |||||||||||||||||| ||||||||||||| Sbjct 1708 GCACTCTGCAACTCGAGTGCATGAAGTTGGAATCGCTAGTAATCGCAGATCAGCATGCTG 1767 Query 480 CGGTGAATACGTTCCCG 496 ||||||||||||||||| Sbjct 1768 CGGTGAATACGTTCCCG 1784 >seq3583 Length=2760 Score = 367 bits (406), Expect = 4e-99 Identities = 388/504 (77%), Gaps = 14/504 (3%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 ||||| |||||| ||||||||||||||||||| ||||| |||||||||||||||||||| Sbjct 982 TACGATCGCAAGATTGAAACTCAAAGGAATTGGCGGGGGTCCGCACAAGCGGTGGAGCAT 1041 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| | |||||| |||||||||| || || || | || | | Sbjct 1042 GTGGTTTAATTCGATGATACGCGAGGAACCTTACCTGGGCTAGA-ATGCA--GATCGACC 1098 Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGA-----CAGAGTGACAGGTGATGCATGGTTGTC 175 | | | || | | || | | | | | || ||||| ||||||| |||| Sbjct 1099 GTGGGTGAAAGCT---CATTTTGTAGCAATACACGGTCTGTAAGGTGCTGCATGGCTGTC 1155 Query 176 GTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTA 235 ||||||||||| |||||| |||||||||||||||||||||||||||||||| | || Sbjct 1156 GTCAGCTCGTGCCGTGAGGTGTTGGGTTAAGTCCCGCAACGAGCGCAACCCCCATCACTA 1215 Query 236 GTTGCCATCAT-TAA-GTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGG 293 |||||||||| ||| | |||| |||||| ||||||| | | || |||||||| Sbjct 1216 GTTGCCATCAGGTAACGCTGGGAACTCTAGTGAAACTGCCGTCGTAAGACGTGAGGAAGG 1275 Query 294 TGGGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGG 353 ||||| || ||||| |||||||| || ||||| ||||||||||||||||||||||| Sbjct 1276 AGGGGATGATGTCAAGTCATCATGGCCTTTATGCCCAGGGCTACACACGTGCTACAATGG 1335 Query 354 ACAATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTT 413 | |||||| || || | |||| ||| |||| || ||| | |||||||| Sbjct 1336 GAAGGACAAAGAGCTGCCACTTGGCGACAAGGAGCTAATCTCAAAAACCTTCTCTCAGTT 1395 Query 414 CGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGC 473 | ||||| |||||||||||||||| ||||||||||||||||||||||||||| |||||| Sbjct 1396 CAGATTGGAGTCTGCAACTCGACTCCATGAAGCTGGAATCGCTAGTAATCGTATATCAGC 1455 Query 474 -ATGCTACGGTGAATACGTTCCCG 496 ||| ||||||||||||||||||| Sbjct 1456 AATGATACGGTGAATACGTTCCCG 1479 >seq1466 Length=17362 Score = 232 bits (256), Expect = 2e-58 Identities = 353/500 (71%), Gaps = 42/500 (8%) Strand=Plus/Plus Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTT 66 |||||| |||||| ||||||||||||||||| | ||||||||||||||||||||||| Sbjct 12290 CGCAAGATTGAAATTCAAAGGAATTGACGGGAGTCTACACAAGCGGTGGAGCATGTGGTT 12349 Query 67 TAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTCTAGAGA 126 |||||||| ||||| ||||||||||||| ||||| || | | || | | Sbjct 12350 TAATTCGATAATACGCGCAGAACCTTACCAACTCTTG-------CTAATTTTTTTATAAA 12402 Query 127 TAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAGCTCGTG 186 ||| | | ||| ||||| | ||||||| ||||||||||||||| Sbjct 12403 A-----TTTTATAT-------AAAGA---ACAGGCGTTGCATGGCTGTCGTCAGCTCGTG 12447 Query 187 TCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGCCATCAT 246 | |||| ||||| |||||| ||| ||||||||||||||||| |||||| | | || Sbjct 12448 TTGTGAAATGTTTGGTTAAATCCTTTAACGAGCGCAACCCTTATTGTTAGTTACTA--AT 12505 Query 247 TAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGA------------GGAAGGT 294 | | | | | ||| |||| | ||| ||| | ||||||| Sbjct 12506 TTATTATAAAAATAAAAG--GACT-CTAATGAAAAAATTAATGATAGGTTAATGGAAGGT 12562 Query 295 GGGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGA 354 | ||| |||||||| || ||||| ||||||||| |||||||||||||||||||||||| Sbjct 12563 GAGGATGACGTCAAGTCTTCATGGCCCTTATGAGTTGGGCTACACACGTGCTACAATGAT 12622 Query 355 CAATACAAAGGGCAGC--GAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGT 412 | ||||| | | || || || | ||||||| | |||| | ||| ||| Sbjct 12623 AATTACAATGAGAGGCAATAATTTTAAAGTTGGAGCAAAT-CTTTAAAAATTATCTTAGT 12681 Query 413 TCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAG 472 ||||||| | ||| |||||| | |||||||||||||||||||||||||| | | ||| Sbjct 12682 TCGGATTAAGGGCTGAAACTCGCCCTTATGAAGCTGGAATCGCTAGTAATCGCAAAACAG 12741 Query 473 CATGCTACGGTGAATACGTT 492 |||| | ||||||||| ||| Sbjct 12742 CATGTTGCGGTGAATATGTT 12761 >seq8583 Length=1012 Score = 125 bits (138), Expect = 2e-26 Identities = 142/188 (76%), Gaps = 3/188 (2%) Strand=Plus/Minus Query 307 AAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGG 366 || || ||||| ||||||||| |||||||||||||||||||||||| | ||||| | | Sbjct 883 AAGTCTTCATGGCCCTTATGAGTTGGGCTACACACGTGCTACAATGATAATTACAATGAG 824 Query 367 CAGCGAAACCGCGA--GGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGT 424 || | | | | | |||||||| ||| || | || |||||||||| | Sbjct 823 AGGCAATAATTTTAAAGTTGGAGCAAATCTTTAAAAATTAT-CTTAGTTCGGATTAAGGA 765 Query 425 CTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCATGCTACGGTG 484 ||| |||||| | |||||||||||||||||||||||||| | | ||||||| | ||||| Sbjct 764 CTGAAACTCGCCCTTATGAAGCTGGAATCGCTAGTAATCGCAAAACAGCATGTTGCGGTG 705 Query 485 AATACGTT 492 |||| ||| Sbjct 704 AATATGTT 697 >seq3808 Length=3074 Score = 98.7 bits (108), Expect = 3e-18 Identities = 75/89 (84%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 15 TGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGA 74 ||||| ||||||||||||| ||| | ||||||||||||||||||||||||||||||| Sbjct 206 TGAAATTCAAAGGAATTGATGGGAGGCTACACAAGCGGTGGAGCATGTGGTTTAATTCGA 147 Query 75 AGCAACGCGAAGAACCTTACCAAATCTTG 103 |||| ||||||||||||| ||||| Sbjct 146 TAATACGCACAGAACCTTACCAACTCTTG 118 >seq8881 Length=1210 Score = 96.9 bits (106), Expect = 1e-17 Identities = 73/86 (85%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 18 AACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGAAGC 77 || || |||||||||||||| | ||||||||||||||||||||||||||||||| Sbjct 352 AAATCCAAGGAATTGACGGGAGTCTACACAAGCGGTGGAGCATGTGGTTTAATTCGATAA 411 Query 78 AACGCGAAGAACCTTACCAAATCTTG 103 ||||| ||||||||||||| ||||| Sbjct 412 TACGCGCAGAACCTTACCAACTCTTG 437 >seq256 Length=40001 Score = 86.0 bits (94), Expect = 2e-14 Identities = 84/107 (79%), Gaps = 1/107 (1%) Strand=Plus/Plus Query 386 AGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAG 445 |||||||| ||| || | || |||||||||| | ||| |||||| | ||||||| Sbjct 15492 AGCAAATCTTTAAAAATTAT-CTTAGTTCGGATTAAGGGCTGAAACTCGCCCTTATGAAG 15550 Query 446 CTGGAATCGCTAGTAATCGTAGATCAGCATGCTACGGTGAATACGTT 492 ||||||||||||||||||| | | |||||| | ||||||||| ||| Sbjct 15551 CTGGAATCGCTAGTAATCGCAAAATAGCATGTTGCGGTGAATATGTT 15597 >seq815 Length=20964 Score = 84.2 bits (92), Expect = 7e-14 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 8 GCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTT 67 ||||| || |||||| |||| ||||| ||| | |||||||||||| ||||||||| | Sbjct 20006 GCAAGATTAAAACTCGAAGGGATTGATGGGAGGCGCCACAAGCGGTGGTGCATGTGGTAT 20065 Query 68 AATTCGAAGCAACGCGAAGAACCTTACCAAATCTTG 103 |||||| ||||| |||||||| |||| ||||| Sbjct 20066 TATTCGATAATACGCGCAGAACCTTCCCAACTCTTG 20101 >seq692 Length=31027 Score = 77.0 bits (84), Expect = 1e-11 Identities = 70/87 (80%), Gaps = 1/87 (1%) Strand=Plus/Plus Query 406 TCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGT 465 ||| |||| ||||| | ||| |||||| | |||||||||||||||||||||| ||| Sbjct 20112 TCTTAGTTTGGATTAATGGCTGAAACTCGTCCTTATGAAGCTGGAATCGCTAGTATTCGC 20171 Query 466 AGATCAGCATGCTACGGTGAATACGTT 492 | | ||||||| | ||||||||| ||| Sbjct 20172 A-AACAGCATGTTGCGGTGAATATGTT 20197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503860383680