Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq4039 316 3e-84 seq7844 313 4e-83 seq4123 311 1e-82 seq1065 273 3e-71 seq3028 217 2e-54 seq2156 187 4e-45 seq6588 113 7e-23 seq2021 87.8 3e-15 >seq4039 Length=2236 Score = 316 bits (350), Expect = 3e-84 Identities = 231/264 (88%), Gaps = 7/264 (3%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1886 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 1945 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGA--AGCCAATAGTCCCTCTAAGAAG-CCA 118 |||||||||||||||||||||| |||| | || | |||| ||||||||||||||| ||| Sbjct 1946 CCTGTTATTGCCTCAAACTTCCTTTGGTTTGATTACCCAAAAGTCCCTCTAAGAAGTCCA 2005 Query 119 ---GCC-ACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCG 174 ||| ||||| || || | || ||| |||||| | ||||||||||||||| || Sbjct 2006 CACGCCTACCAAAAATGGTAAACGGAACTAGTTAGCACGCGGAGGTCTCGTTCGTTAACG 2065 Query 175 GAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAA 234 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2066 GAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAA 2125 Query 235 TCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||| ||| |||||| Sbjct 2126 TCAAGAAAGAGCTCTCAGTCTGTC 2149 >seq7844 Length=1979 Score = 313 bits (346), Expect = 4e-83 Identities = 222/250 (89%), Gaps = 7/250 (3%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1227 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 1286 Query 76 AAACTTCCATTGGCTGGA--AGCCAATAGTCCCTCTAAGAAG-CCA---GCC-ACCAACC 128 ||||||| |||| | || | |||| ||||||||||||||| ||| ||| ||||| Sbjct 1287 CAACTTCCTTTGGTTTGATTACCCAAAAGTCCCTCTAAGAAGTCCACACGCCTACCAAAA 1346 Query 129 ATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACA 188 || || | || ||| |||||| | ||||||||||||||| |||||||||||||||| Sbjct 1347 ATGGTAAACGGAACTAGTTAGCACGCGGAGGTCTCGTTCGTTAACGGAATTAACCAGACA 1406 Query 189 AATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTA 248 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1407 AATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTC 1466 Query 249 TCAATCTGTC 258 |||||||||| Sbjct 1467 TCAATCTGTC 1476 >seq4123 Length=2161 Score = 311 bits (344), Expect = 1e-82 Identities = 230/264 (87%), Gaps = 7/264 (3%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1811 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 1870 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGA--AGCCAATAGTCCCTCTAAGAAG-CCA 118 |||||||||||||| ||||||| |||| | || | |||| ||||||||||||||| ||| Sbjct 1871 CCTGTTATTGCCTCCAACTTCCTTTGGTTTGATTACCCAAAAGTCCCTCTAAGAAGTCCA 1930 Query 119 ---GCC-ACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCG 174 ||| ||||| || || | || ||| |||||| | ||||||||||||||| || Sbjct 1931 CACGCCTACCAAAAATGGTAAACGGAACTAGTTAGCACGCGGAGGTCTCGTTCGTTAACG 1990 Query 175 GAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAA 234 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1991 GAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAA 2050 Query 235 TCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||| ||| |||||| Sbjct 2051 TCAAGAAAGAGCTCTCAGTCTGTC 2074 >seq1065 Length=16473 Score = 273 bits (302), Expect = 3e-71 Identities = 212/250 (85%), Gaps = 7/250 (3%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| Sbjct 16143 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAGGGGCATCACAGACCTGTTATTTCCTT 16084 Query 76 AAACTTCCATTGGCTGGA--AGCCAATAGTCCCTCTAAGAAG-CCAGCCACCAACCATA- 131 ||||||| |||| | || | || | |||||||||||||| ||| | || |||||| Sbjct 16083 CAACTTCCTTTGGTTTGATTACCCGAAAGTCCCTCTAAGAATTCCACACGCCTACCATAA 16024 Query 132 ---GTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACA 188 || | || | | |||||| | ||||||||||||||| |||||||||| ||||| Sbjct 16023 ATGGTAAACGGAACCAGTTAGCACGCGGAGGTCTCGTTCGTTAACGGAATTAACTAGACA 15964 Query 189 AATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTA 248 |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| Sbjct 15963 AATCACTCCACCAACTAAGAACGGCCATACACCACCACCCATAGAATCAAGAAAAAGCTC 15904 Query 249 TCAATCTGTC 258 |||||||||| Sbjct 15903 TCAATCTGTC 15894 >seq3028 Length=3825 Score = 217 bits (240), Expect = 2e-54 Identities = 199/246 (81%), Gaps = 4/246 (2%) Strand=Plus/Minus Query 14 CGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCC 73 || ||||||||||||||||| |||| | ||||||||||||||||||||||||||||||| Sbjct 330 CGCCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC- 272 Query 74 TCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCAC-CAACCATAG 132 |||| || | |||| | || | | |||||||||||||| | | || ||| Sbjct 271 TCAATCT-CGTGCGGCTAAACACCGAAAATCCCTCTAAGAAGCAACTGAGACATTGATAA 213 Query 133 TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATC 192 || | |||||||| ||| || |||||| ||||||||||||| ||||||||||||| Sbjct 212 TCTC-GTTACTATTTAGTAGGCTAGAGTCTCGCTCGTTATCGGAATAAACCAGACAAATC 154 Query 193 ACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAA 252 ||||| ||||||||||||||||||||||||| ||| |||||| |||||||||||||| Sbjct 153 GATCCACGAACTAAGAACGGCCATGCACCACCAACCACCGAATCATGAAAGAGCTATCAA 94 Query 253 TCTGTC 258 |||||| Sbjct 93 TCTGTC 88 >seq2156 Length=6842 Score = 187 bits (206), Expect = 4e-45 Identities = 189/243 (78%), Gaps = 5/243 (2%) Strand=Plus/Plus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 ||||||||| ||||||| |||| | ||||||||||||||||||||||||||||||| Sbjct 3262 CAGTGTAGCACGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGCGC-- 3319 Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGC-CAGCCACCAACCATAGTCG 135 || ||| |||| | || | |||||||||| | | | ||| || || Sbjct 3320 AATTTCGTGCGGCTCTATACCGCCCATTCCTCTAAGAACTTCTGAGAACAAAATTATTC- 3378 Query 136 ATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACT 195 | | |||| || ||| | |||||| ||||||||||||| ||||||||||||| || Sbjct 3379 -TCGAAGTATTGAGTAGGCTTGCGTCTCGCTCGTTATCGGAATAAACCAGACAAATCGCT 3437 Query 196 CCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCT 255 |||||||||||||||||||||||||||||| ||| |||||||||||||||| ||| ||| Sbjct 3438 CCACCAACTAAGAACGGCCATGCACCACCAACCACCGAATCAAGAAAGAGCTTTCAGTCT 3497 Query 256 GTC 258 ||| Sbjct 3498 GTC 3500 >seq6588 Length=1248 Score = 113 bits (124), Expect = 7e-23 Identities = 67/70 (96%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 189 AATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTA 248 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 573 AAGCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTC 514 Query 249 TCAATCTGTC 258 |||||| ||| Sbjct 513 TCAATCCGTC 504 >seq2021 Length=7438 Score = 87.8 bits (96), Expect = 3e-15 Identities = 51/53 (96%), Gaps = 0/53 (0%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTA 68 ||||||||||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct 1411 TCAGTGTAGCGCGCGTGCGGCTCAGAATATCTAAGGGCATCACAGACCTGTTA 1463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796728344523