Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq8979 385 8e-105 seq8241 381 1e-103 seq4389 248 1e-63 seq548 183 5e-44 seq5795 114 2e-23 seq8763 111 3e-22 seq2512 107 3e-21 seq5261 105 1e-20 seq792 89.7 9e-16 seq4536 78.8 2e-12 seq2252 73.4 7e-11 >seq8979 Length=1466 Score = 385 bits (426), Expect = 8e-105 Identities = 262/293 (89%), Gaps = 1/293 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| || | | || ||| ||||||||||||||||||||||||||||| Sbjct 675 TACTAGGTTGAATTACTATCGCGACG-CGGGCATCAGTAGGGTAAAACTAACCTGTCTCA 733 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| Sbjct 734 CGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACGCTTGGCGA 793 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 || |||| || ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 794 ATGCTGCATCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 853 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || | Sbjct 854 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTTGCTT 913 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 |||||| || | |||||||||||||||||| ||||| ||||||||||| Sbjct 914 CAAATTCTGAAATTCAAAAGGATCGATAGGCCACGCTTTCGCGGTTTGTATTC 966 >seq8241 Length=2069 Score = 381 bits (422), Expect = 1e-103 Identities = 243/264 (92%), Gaps = 0/264 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1563 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 1622 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||||||||||||| || ||| |||| ||||| ||||||||||||||||| Sbjct 1623 TTAGTGGGTGAACAATCCAACAATTGGCGAGTTCTACTTCGCAATGATAGGAAGAGCCGA 1682 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1683 CATCGAAGAATCAAAAAGCAACGTCGCTATGGACGCTTGGCTGCCACAAGCCAGTTATCC 1742 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270 ||||||||||||||||| |||||||||| | ||||| | | ||||||||||||||||| Sbjct 1743 CTGTGGTAACTTTTCTGACACCTCTAGCTTAAAATTCTAAAGAACTAAAGGATCGATAGG 1802 Query 271 CCACACTTTCATGGTTTGTATTCA 294 |||| |||||| |||||||||||| Sbjct 1803 CCACGCTTTCACGGTTTGTATTCA 1826 >seq4389 Length=2426 Score = 248 bits (274), Expect = 1e-63 Identities = 161/177 (91%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 118 CGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGC 177 ||| |||| ||||| ||||||||||||||||||||||||| |||||||||||||||||| Sbjct 712 CGAGTTCTACTTCGCAATGATAGGAAGAGCCGACATCGAAGAATCAAAAAGCAACGTCGC 771 Query 178 TATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAG 237 |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 772 TATGGACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAG 831 Query 238 CCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 | | ||||| | | ||||||||||||||||||||| |||||| |||||||||||| Sbjct 832 CTTAAAATTCTAAAGAACTAAAGGATCGATAGGCCACGCTTTCACGGTTTGTATTCA 888 >seq548 Length=27711 Score = 183 bits (202), Expect = 5e-44 Identities = 144/171 (84%), Gaps = 1/171 (1%) Strand=Plus/Minus Query 124 CTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAA 183 || ||||| ||||| ||||||||||||||||| |||||||| ||||||||| || | Sbjct 20632 CTACTTCGCACTGATAAGAAGAGCCGACATCGAACACTCAAAAAGAAACGTCGCTTTGGA 20573 Query 184 CGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAA 243 |||||||||| ||||||||||||||||||||||||||||| || |||||||||| | || Sbjct 20572 AGCTTGGCTGCGACAAGCCAGTTATCCCTGTGGTAACTTTT-TGACACCTCTAGCTTTAA 20514 Query 244 ATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 | | ||| | || ||||||||| ||| |||| |||||| |||||||| ||| Sbjct 20513 ACTCCGAAGAACCAAAGGATCGGTAGACCACGCTTTCACGGTTTGTAATCA 20463 >seq5795 Length=1409 Score = 114 bits (126), Expect = 2e-23 Identities = 71/76 (93%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||| ||||||||||||||||||||||| || ||||||||||||||||| |||||||| Sbjct 721 TCATCAATAGGGTAAAACTAACCTGTCTCACGATGGTCTAAACCCAGCTCAGGTTCCCTA 780 Query 91 TTAGTGGGTGAACAAT 106 ||||||||||||| || Sbjct 781 TTAGTGGGTGAACTAT 796 >seq8763 Length=1517 Score = 111 bits (122), Expect = 3e-22 Identities = 70/76 (92%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||| ||||||||||||||||||||||| || ||||||||||||||||| |||||||| Sbjct 152 TCATCAATAGGGTAAAACTAACCTGTCTCACGATGGTCTAAACCCAGCTCAGGTTCCCTA 211 Query 91 TTAGTGGGTGAACAAT 106 ||||||||| ||| || Sbjct 212 TTAGTGGGTAAACTAT 227 >seq2512 Length=17149 Score = 107 bits (118), Expect = 3e-21 Identities = 70/76 (92%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||| |||| |||||||||||||||||| |||||||||||||||||||| ||||| || Sbjct 14248 TCATCATTAGG-TAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCAGGTTCCATA 14306 Query 91 TTAGTGGGTGAACAAT 106 ||||||||||||| || Sbjct 14307 TTAGTGGGTGAACTAT 14322 >seq5261 Length=1560 Score = 105 bits (116), Expect = 1e-20 Identities = 78/90 (87%), Gaps = 1/90 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||||||| ||||| || | | ||| |||| ||||||||||||||||||||||||| Sbjct 90 TACTAAGCAAGATTACTATCGCAACAACGAGTCAACAGTAGGGTAAAACTAACCTGTCTC 31 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCT 89 | |||||||||||||||||||||||||||| Sbjct 30 ACGACGGTCTAAACCCAGCTCACGTTCCCT 1 >seq792 Length=30659 Score = 89.7 bits (98), Expect = 9e-16 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGC 238 || ||||||||||||||||||||||||||||||||||||||||||||| || |||||| Sbjct 14073 TGGACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACATATCTAGC 14015 >seq4536 Length=1895 Score = 78.8 bits (86), Expect = 2e-12 Identities = 124/175 (71%), Gaps = 6/175 (3%) Strand=Plus/Minus Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112 |||||||| |||| ||| |||||||||||||| || ||| | || ||||| | ||| Sbjct 711 CTGTCTCACGACGTTCTGAACCCAGCTCACGTACCGCTTTAATTGGCGAACAGCCAAACC 652 Query 113 CTTACCGAATTCTGCTTCGGT---ATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169 ||| || ||||| | | | ||| || ||||||||||||| | |||| | | Sbjct 651 CTTGG-GAC--CTGCTCCAGCCCCAGGATGCGATGAGCCGACATCGAGGTGCCAAACAAC 595 Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224 ||||| |||| || ||||| | || |||| |||||||| | ||| ||||| Sbjct 594 CCCGTCGATATGGACTCTTGGGGGTCATCAGCCTGTTATCCCCGGCGTACCTTTT 540 >seq2252 Length=6434 Score = 73.4 bits (80), Expect = 7e-11 Identities = 122/175 (70%), Gaps = 6/175 (3%) Strand=Plus/Plus Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112 |||||||| |||| ||| |||||||||||||| || ||| |||| ||||| ||||| Sbjct 967 CTGTCTCACGACGTTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACC 1026 Query 113 CTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169 ||| || | | | || | | | | || ||||||||||||| | |||| | Sbjct 1027 CTTGGGACGTACTACCGCCCC---AGGTTGCGACGAGCCGACATCGAGGTGCCAAACCTC 1083 Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224 ||||| | || || ||||| | | |||| |||||||| |||||||||| Sbjct 1084 CCCGTCGATGTGGACTCTTGGGGGAGATCAGCCTGTTATCCCCAGGGTAACTTTT 1138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854320686048