Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq2252 233 4e-59 seq4536 208 1e-51 seq1601 188 1e-45 seq3065 165 2e-38 seq2933 109 1e-21 seq1711 109 1e-21 >seq2252 Length=6434 Score = 233 bits (258), Expect = 4e-59 Identities = 208/259 (80%), Gaps = 1/259 (0%) Strand=Plus/Minus Query 81 TTTCTAACCGGACGACGTATAACCGTTGACGGGACAGTGTCAGTCGGGCAGTTTGACTGG 140 ||||||||| | |||| | ||| | ||||||||| | | |||||||||||||| Sbjct 1377 TTTCTAACCCGCGTCCGTA-ATCCGGCGTAGGGACAGTGGCTGGTAGGCAGTTTGACTGG 1319 Query 141 GGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGGAAA 200 ||||||||||||| |||||||||||||||||||||||| | ||||||| |||| |||||| Sbjct 1318 GGCGGTCGCCTCCTAAAGAGTAACGGAGGCGCCCAAAGGTTCCCTCAGATTGGTTGGAAA 1259 Query 201 CCATGCGCACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGG 260 || |||| |||| ||||||| ||||| | ||||||| || || || ||| | |||| Sbjct 1258 TCAATCGCAGAGTGTAAAGGCACAAGGGAGCTTGACTGTGAGACTGACAGGTCGAACAGG 1199 Query 261 GACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGAT 320 ||||||||||||||||| ||||||| || | ||||| | |||||||| |||||| Sbjct 1198 GACGAAAGTCGGGCTTAGTGATCCGACGCCAGCGCGTGGAAGTGGCGTCGCTCAACGGAT 1139 Query 321 AAAAGCTACCCTGGGGATA 339 ||||| ||||||||||||| Sbjct 1138 AAAAGTTACCCTGGGGATA 1120 >seq4536 Length=1895 Score = 208 bits (230), Expect = 1e-51 Identities = 233/310 (75%), Gaps = 1/310 (0%) Strand=Plus/Plus Query 30 ACGCCAGTATTCAAGGAGCCGCTGTTGGGATACTACCCCTGTTGTATTGGATTTCTAACC 89 |||||||| ||| |||||| ||| |||| |||| | | | ||||| ||||||| Sbjct 250 ACGCCAGTTTTCGTGGAGCCATCCTTGAAATACCACCCTTATCTTCGTGGATGTCTAACC 309 Query 90 GGACGACGTATAACCGTTGACGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGC 149 | ||| || ||| ||||||||||| | ||| |||||||||||||||||||| Sbjct 310 GCGGTCCGT-TATCCGGATCCGGGACAGTGTATGGTGGGTAGTTTGACTGGGGCGGTCGC 368 Query 150 CTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCA 209 ||||||||||||||||||||||| | ||| | ||||| || ||||| | | || Sbjct 369 CTCCCAAAGAGTAACGGAGGCGCGCGAAGGTGGGCTCAGGCCGGTCGGAAATCGTTCGTC 428 Query 210 CAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGT 269 ||||||| |||| ||| | ||||||||| || |||||| ||||| ||||||||| Sbjct 429 GAGTGCAATGGCATAAGCCCGCCTGACTGCGAGACTGACAAGTCGAGCAGAGACGAAAGT 488 Query 270 CGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTAC 329 ||| | || |||||||| ||| | | ||||| |||| |||||| ||||||||||| ||| Sbjct 489 CGGTCATAGTGATCCGGTGGTCCCGTGTGGAAGGGCCATCGCTCAACGGATAAAAGGTAC 548 Query 330 CCTGGGGATA 339 | ||||||| Sbjct 549 GCCGGGGATA 558 >seq1601 Length=10388 Score = 188 bits (208), Expect = 1e-45 Identities = 179/229 (78%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 ||||| |||| | ||||||||||||||||||||| ||||||||||||||||||||| Sbjct 4999 GGGACCGTGTATGGTAGGCAGTTTGACTGGGGCGGTCTCCTCCCAAAGAGTAACGGAGGA 5058 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTG 230 | | ||| || ||| | || ||||| | | | | ||||||| ||||||||| || Sbjct 5059 GTGCGAAGGTAACCTAGGTACGGTCGGAAATCGTACTGATAGTGCAATGGCAAAAGGTTG 5118 Query 231 TTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGT 290 |||||||||| || || ||| |||||| |||||| || | || |||||||| ||| Sbjct 5119 CTTGACTGCGAGACGGACAGGTCGAGCAGGTGCGAAAGCAGGTCATAGTGATCCGGTGGT 5178 Query 291 GCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||| |||||| |||| |||||| ||||||||||| ||| ||||||||| Sbjct 5179 TCTGTATGGAAGGGCCATCGCTCAACGGATAAAAGGTACTCTGGGGATA 5227 >seq3065 Length=3725 Score = 165 bits (182), Expect = 2e-38 Identities = 167/215 (78%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 126 GGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCT 185 ||| ||||||||||||| |||||||||| |||||||||||||||| ||||| | |||| Sbjct 2017 GGGTAGTTTGACTGGGGTGGTCGCCTCCTAAAGAGTAACGGAGGCTTGCAAAGGTTCCCT 1958 Query 186 CAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACC 245 ||| || ||| || | | || | || ||| | | ||||| | ||||||| || | Sbjct 1957 CAGTACGGTTGGTAATCGTACGTAGAGCGCATTAGTATAAGGGAGCTTGACTGTGAGGCA 1898 Query 246 CTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAA-TGATCCGGCGGTGCTGAATGGAACGG 304 || | | |||||||||||||||| |||| || |||||||| ||| ||| |||||| || Sbjct 1897 TACACGCCGAGCAGGGACGAAAGTC-GGCTAAAGTGATCCGGTGGTTCTGTATGGAAGGG 1839 Query 305 CCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 || |||||| | ||||||||| ||| | ||||||| Sbjct 1838 CCATCGCTCAAAGGATAAAAGGTACTCCGGGGATA 1804 >seq2933 Length=8488 Score = 109 bits (120), Expect = 1e-21 Identities = 154/216 (71%), Gaps = 3/216 (1%) Strand=Plus/Minus Query 127 GGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTC 186 || |||||||||||||||||| ||||| ||||||||||||||| | ||||| || ||| Sbjct 915 GGTAGTTTGACTGGGGCGGTCACCTCCTAAAGAGTAACGGAGGTGTACAAAGGTAAGCTC 856 Query 187 AGCTTGG---ATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACA 243 | |||| | ||| || | | ||| || | ||||| || ||||||| | | Sbjct 855 AAATTGGAATAATAAAATCAATTGTAGAGTATAATGATAAAAGCTTGCTTGACTGTAAGA 796 Query 244 CCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACG 303 || || | |||||||||||||||| | || ||||||| | || ||||| | Sbjct 795 TAGACATATCAAACAGGGACGAAAGTCGGTCATAGTGATCCGATAATTCTTTGTGGAAAG 736 Query 304 GCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 |||||| ||||||||||| ||| | ||||||| Sbjct 735 ATTATCGCTCAACGGATAAAAGGTACTCCGGGGATA 700 >seq1711 Length=9496 Score = 109 bits (120), Expect = 1e-21 Identities = 154/216 (71%), Gaps = 3/216 (1%) Strand=Plus/Minus Query 127 GGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTC 186 || |||||||||||||||||| ||||| ||||||||||||||| | ||||| || ||| Sbjct 915 GGTAGTTTGACTGGGGCGGTCACCTCCTAAAGAGTAACGGAGGTGTACAAAGGTAAGCTC 856 Query 187 AGCTTGG---ATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACA 243 | |||| | ||| || | | ||| || | ||||| || ||||||| | | Sbjct 855 AAATTGGAATAATAAAATCAATTGTAGAGTATAATGATAAAAGCTTGCTTGACTGTAAGA 796 Query 244 CCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACG 303 || || | |||||||||||||||| | || ||||||| | || ||||| | Sbjct 795 TAGACATATCAAACAGGGACGAAAGTCGGTCATAGTGATCCGATAATTCTTTGTGGAAAG 736 Query 304 GCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 |||||| ||||||||||| ||| | ||||||| Sbjct 735 ATTATCGCTCAACGGATAAAAGGTACTCCGGGGATA 700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982308803808