Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq2252 421 1e-115 seq1601 313 5e-83 seq6228 199 8e-49 seq3583 199 8e-49 seq1466 120 7e-25 seq3111 91.5 3e-16 >seq2252 Length=6434 Score = 421 bits (466), Expect = 1e-115 Identities = 316/366 (86%), Gaps = 4/366 (1%) Strand=Plus/Plus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 |||||| ||||| |||| | | | |||||||| | | ||| ||||||||||||||| Sbjct 5202 TTTACATACCGAAATACTTCATCCTC-CACGCGGCGTCG-CTGCGTCAGGCTTTCGCCCA 5259 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5260 TTGCGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 5319 Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181 ||||||||||||||||||||||||| || |||||| | ||||||||||| ||||| ||| Sbjct 5320 GTGACTGATCATCCTCTCAGACCAGCTAAGGATCGAAGTCTTGGTGAGCCTTTACCCCAC 5379 Query 182 CAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTT 241 ||||||||||||||||| | |||||||||||||||| ||| |||||| ||||| |||| Sbjct 5380 CAACTAGCTAATCCGACATGGGCTCATCTGATAGCGAGAGGTCCGAAGATCCCCCCCTTT 5439 Query 242 CTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAGG 301 | |||||||| |||||||||||||||||| | |||| |||||| ||||||||||||||| Sbjct 5440 CCCCCGTAGGGCGTATGCGGTATTAGCGTTCCTTTCGAAACGTTGTCCCCCACTACCAGG 5499 Query 302 CAGATTCCTAGGCATTACTCACCCGTCCGCCGCTCTCAAGAGAAGCAAGCTTCTCTCTAC 361 |||||||| | | ||||||||||||||||||||| || | |||||||| | ||| || Sbjct 5500 CAGATTCCCATGTATTACTCACCCGTCCGCCGCT-GCATCGGTAGCAAGCTAC-CTCAAC 5557 Query 362 CGCTCG 367 |||||| Sbjct 5558 CGCTCG 5563 >seq1601 Length=10388 Score = 313 bits (346), Expect = 5e-83 Identities = 274/337 (81%), Gaps = 18/337 (5%) Strand=Plus/Minus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 ||||||||||| ||||||||| | ||| |||||||||| ||||||||||||||| ||||| Sbjct 859 CTTTACAATCCTAAGACCTTCAT-CACTCACGCGGCAT-GGCTGGATCAGGCTTGCGCCC 802 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 |||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||| Sbjct 801 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTTTGGGCCGTGTCTCAGTCCCAA 742 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 |||| ||||||||||||||||||||| || |||||||||||||||| ||| ||||| || Sbjct 741 TGTGGCTGATCATCCTCTCAGACCAGCTATGGATCGTCGCCTTGGTAGGCCTTTACCCCA 682 Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGA-AGGTCCCCTGCT 239 ||||||||||||||| || |||||||| ||| ||||| | | || Sbjct 681 CCAACTAGCTAATCCAACGCGGGCTCATC--------CAA-CCCCGATAAAT------CT 637 Query 240 TTCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCA 299 ||| |||||||| |||||||||||||||| ||||||| |||||| || | || Sbjct 636 TTCCCCCGTAGGGCGTATGCGGTATTAGCACACGTTTCCATGCGTTATTCCGTAGTAAAG 577 Query 300 GGCAGATTCCTAGGCATTACTCACCCGTCCGCCGCTC 336 || | |||| | || ||||||||||||| ||| ||| Sbjct 576 GGTACGTTCCCACGCGTTACTCACCCGTCTGCCACTC 540 >seq6228 Length=1310 Score = 199 bits (220), Expect = 8e-49 Identities = 163/194 (84%), Gaps = 3/194 (2%) Strand=Plus/Minus Query 2 TTTACAATCC-GAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 ||||||| || || | ||||| | | | |||||||||| |||||| |||| ||| || || Sbjct 952 TTTACAACCCAGAGGGCCTTCATCCTC-CACGCGGCAT-GGCTGGTTCAGACTTGCGTCC 895 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 |||| |||||||||| ||||||||||||||||||||||| || |||||||||||| || | Sbjct 894 ATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTCGGGCCCGTGTCTCAGTGCCCG 835 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 |||||||| || | |||||| ||||||||| |||||| | ||||||| ||| ||||| | Sbjct 834 TGTGACTGGTCGTGCTCTCACACCAGTTACTGATCGTGGACTTGGTGGGCCGTTACCCCG 775 Query 181 CCAACTAGCTAATC 194 ||||||| |||||| Sbjct 774 CCAACTATCTAATC 761 >seq3583 Length=2760 Score = 199 bits (220), Expect = 8e-49 Identities = 154/182 (85%), Gaps = 1/182 (1%) Strand=Plus/Minus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 ||||||| || |||||||||||||| || |||||||||||||||||| |||||||||||| Sbjct 505 CACGCGGGAT-GGCTGGATCAGGCTCTCACCCATTGTCCAATATTCCTCACTGCTGCCTC 447 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| |||||||||||| |||||||| |||| |||||||| | | Sbjct 446 CCGTAGGAGTCTGGTCCGTGTCTCAGTACCAGTGTGGGGGATCTCCCTCTCAGGACCCCT 387 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCAT 208 || ||||| |||||||| |||| |||||| |||||||||||||| ||| | |||||| Sbjct 386 ACCCATCGTTGCCTTGGTAAGCCGTTACCTTACCAACTAGCTAATGGGACGCATGCTCAT 327 Query 209 CT 210 || Sbjct 326 CT 325 >seq1466 Length=17362 Score = 120 bits (132), Expect = 7e-25 Identities = 127/165 (77%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 23 TTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGC 82 ||||| ||| ||| |||| |||||||| |||||||| |||||||||| |||||||||||| Sbjct 11833 TTCACTCACTCGGTATTG-CTGGATCAAGCTTTCGCTCATTGTCCAAAATTCCCCACTGC 11775 Query 83 TGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGA 142 ||||| | ||| ||| |||||||||||| ||| |||| |||||||| || ||| | Sbjct 11774 TGCCT-TTAAAAAAGTTTGGGCCGTGTCTCAGTCCCAATGTGGCTGATCATTCTTTCAAA 11716 Query 143 CCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTA 187 |||| || ||| | |||||| | |||| |||||||| Sbjct 11715 CCAGCTAAAGATAAGAGGCTTGGTAGTCTATTAAACAACCAACTA 11671 >seq3111 Length=4339 Score = 91.5 bits (100), Expect = 3e-16 Identities = 83/102 (81%), Gaps = 2/102 (2%) Strand=Plus/Minus Query 23 TTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGC 82 ||||| ||| ||| |||| |||||||| |||||||| |||||||| | |||||||||||| Sbjct 100 TTCACTCACTCGGTATTG-CTGGATCAAGCTTTCGCTCATTGTCCGAAATTCCCCACTGC 42 Query 83 TGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTG 124 ||||| | ||| ||| |||||||||||| ||| |||| Sbjct 41 TGCCT-TTAAAAAAGTTTGGGCCGTGTCTCAGTCCCAATGTG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071900486240