Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= AAMG01001286.1 Length=411 Score E Sequences producing significant alignments: (Bits) Value seq2339 93.3 1e-16 >seq2339 Length=7396 Score = 93.3 bits (102), Expect = 1e-16 Identities = 197/294 (67%), Gaps = 0/294 (0%) Strand=Plus/Plus Query 88 ACCAGGATGTCTTCCATGATCAGGTATTGCAGGTCGGAGCCAAAGAACATGTCCAGCGCG 147 |||||||| ||||||| |||| || | ||| || ||||| | ||||| | || ||| Sbjct 5319 ACCAGGATATCTTCCAGCATCAAATACTCCAGATCACAGCCATAAAACATATTCAAGGCG 5378 Query 148 TCTTTCGGCGAGCAGATCATCGCTTCGCCACGGCGGTTGAGCGAGGTGTTCAGGGACACG 207 || |||| ||| | ||| | ||||| || ||||| | || || || || ||| Sbjct 5379 TCGGTCGGACTGCATACCATAGGCTCGCCGCGTCGGTTCAATGAAGTATTGAGCACCACA 5438 Query 208 CCGTTGCCGGTCAGCACTTCCAGCTCTTTCATCATGTCGTAGTAGCGCGGGTTGTATTCG 267 || ||||| || | ||||| | | |||| ||| || ||||| ||| || Sbjct 5439 CCATTGCCACGCAACTGCTCCAGATGCTCGATCAGCGAGTAATAACGCGGATTGGTCTCC 5498 Query 268 CGCTTGAGCACCTGGGCGCGGGAGGTGCCATCTTCATGGACCACTTCCGGCACGCGGGTC 327 | ||| | || ||||| | || ||||||||||| |||||||| || | ||||| Sbjct 5499 TGGGTGACGATTTGCGCGCGCGCAGTCCCATCTTCATGCACCACTTCGGGAATGCGGGCT 5558 Query 328 TTCCACTCTTCCGACACTTCAAAGGTGAAGGTCATGAACGGCGCCGGGTGATCG 381 ||||| | ||| |||||||| || |||||| | || || || || ||| Sbjct 5559 TTCCATGCAGGATTCACGTCAAAGGTAAACGTCATGTAAGGGGCTGGATGCTCG 5612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1212687415776