Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq1601 421 2e-115 seq4110 282 1e-73 seq2252 219 1e-54 seq3065 196 1e-47 >seq1601 Length=10388 Score = 421 bits (466), Expect = 2e-115 Identities = 352/416 (85%), Gaps = 14/416 (3%) Strand=Plus/Minus Query 4 CCGATCCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAG 63 || |||||||| |||| || || ||||||||| | || ||||||| |||||||| Sbjct 3568 CCTATCCACAGCTCATCCCC--AAATTTTTCAACATTTGTGGGTTCGGACCTCCAGTACC 3511 Query 64 TAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTC 123 | ||||| ||||| || |||| |||| ||||||||| | ||||| |||||||| | Sbjct 3510 T-GTTACGGCACCTT-CATCCTGGCCAT-GGATAGATCACTTGGTTT-CGGGTCTACA-C 3456 Query 124 CCAGCGACTAGA-CGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAA 182 |||||||||| ||||||| | |||||| ||| | ||||||||||||||| ||||||| Sbjct 3455 CCAGCGACTAATTCGCCCTATTCGGACTCGATTT-CTCTACGCCTCCCCTAT-CGGTTAA 3398 Query 183 GCTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACA 242 |||| ||||||||| |||||||||||||||||||||||||||||||||||||||| | Sbjct 3397 GCTT-GCCACTGAATGTAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCC--CT 3341 Query 243 AAGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCG 302 | ||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||| Sbjct 3340 TACGAGGCTCCCACTGTTTGTATGCATACGGTTTCAGGATCTATTTCACTCCCCTC-CCG 3282 Query 303 GGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTA 362 |||||||||||||||||||||||||||||| |||||||||||||| | | |||||||| Sbjct 3281 GGGTTCTTTTCGCCTTTCCCTCACGGTACTGGTTCACTATCGGTCGATTACGAGTATTTA 3222 Query 363 GCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACT 418 ||||||||||||||||||||||| |||||||| ||||||||||| ||| |||||| Sbjct 3221 GCCTTGGAGGATGGTCCCCCCATGTTCAGACAGGGTTTCTCGTGCCCCGCCCTACT 3166 >seq4110 Length=2169 Score = 282 bits (312), Expect = 1e-73 Identities = 321/416 (77%), Gaps = 15/416 (4%) Strand=Plus/Plus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||||||||| ||| |||||| ||||| | ||||||||||||||| | || ||| Sbjct 1130 CCACAGGTCAT-CCGAAGACTTTT-CAACGTCAACCGGTTCGGTCCTCCACTGTGT-GTT 1186 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 ||| | ||| |||||||||||| || |||||| | |||||| || ||||| | | Sbjct 1187 ACCACAGCTT-CAACCTGCCCATGGG-TAGATCACACGGTTT-CGCGTCTAACACT-ACT 1242 Query 129 GACTAGA-CGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCC----CCTATTCGGTTAAG 183 ||||| | ||||||| | ||||||||||| ||||||| ||| | || | ||| Sbjct 1243 GACTAAAGCGCCCTATTCAGACTCGCTTT-CGCTACGGATCCGTGGCTTAAACACTTATC 1301 Query 184 CTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAA 243 ||| |||| | ||| ||| | | |||||| ||||||| |||| ||||||| || Sbjct 1302 CTT-GCCAGCAACGTTAACTCGTAGGCTCATTATGCAAAAGGCACGCCGTCACCCCACTT 1360 Query 244 AGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGG 303 | ||||||| || ||||||| || || |||||||||||||||||||| | || | || Sbjct 1361 AA-GGGCTCCGACCGCTTGTAGGCGTATGGTTTCAGGATCTATTTCACCCTTCTATTCGA 1419 Query 304 GGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAG 363 || |||||| |||||||||||||||||| |||||||||||||| |||| ||||||||| Sbjct 1420 AGTGCTTTTCACCTTTCCCTCACGGTACTGGTTCACTATCGGTCTCTCAGGAGTATTTAG 1479 Query 364 CCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTC 419 |||||| |||||||||| || ||||||||| ||||| ||||| ||| ||||||| Sbjct 1480 CCTTGGCGGATGGTCCCGCCGAATTCAGACAGGGTTTCACGTGCCCCGCCCTACTC 1535 >seq2252 Length=6434 Score = 219 bits (242), Expect = 1e-54 Identities = 317/423 (75%), Gaps = 27/423 (6%) Strand=Plus/Plus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 |||||| |||| || | || ||||||||| | || ||||||| |||||| ||| || Sbjct 2803 CCACAGCTCATCCC-CGAA-TTTTTCAACATTCGTGGGTTCGGACCTCCACGCAGT-GTC 2859 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 ||| ||| || |||| |||| || ||||||||| || || |||||||| | || | Sbjct 2860 ACCTGCGCTT-CATCCTGGCCAT-GGCTAGATCGCCTGGGTT-CGGGTCTACAGCACA-C 2915 Query 129 GACTAGA--CGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCC-CTATT--CGG-TTAA 182 |||| | ||||||| | ||||||||||| |||| || |||| ||||| || |||| Sbjct 2916 AACTAAAATCGCCCTATTCAGACTCGCTTT-CGCTTCGGCTCCGTCTATTTACGACTTAA 2974 Query 183 GCTTTGCCACTG---AAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCA 239 || | ||| | |||| ||| | | |||| | ||| |||||||| ||||||| Sbjct 2975 CCT----CGCTGTGTACCATAACTCGGCGGCTCATTCTTCAACAGGTACGCTGTCACCCT 3030 Query 240 ACAAAGT-GGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTC 298 | |||| ||||||| |||||||||| || ||||||||| | |||||||||||||||| Sbjct 3031 -CTAAGTAGGGCTCCAACTGCTTGTAAGCGCACGGTTTCACG-TCTATTTCACTCCCCT- 3087 Query 299 TCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTA 358 |||||||| |||||| |||||||||||||||||| ||||||||||||| | |||| Sbjct 3088 TCCGGGGTGCTTTTCACCTTTCCCTCACGGTACTTGTTCACTATCGGTTGCTGTTCAGTA 3147 Query 359 TTTAGCCTT-GGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTAC 417 |||||||| || | ||||| | | ||||| | | |||| |||| |||| ||||| Sbjct 3148 CTTAGCCTTACGAAG-TGGTCTTCGCGGATTCAACCGGAATTTCACGTGTTCCGGCCTAC 3206 Query 418 TCG 420 ||| Sbjct 3207 TCG 3209 >seq3065 Length=3725 Score = 196 bits (216), Expect = 1e-47 Identities = 275/373 (74%), Gaps = 21/373 (6%) Strand=Plus/Plus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 || ||| |||| ||| ||||||| ||||| | ||||||||||||||| || ||| Sbjct 3370 CCTCAGTTCAT-CCGAAAACTTTT-CAACGTTTACCGGTTCGGTCCTCCACGATGT-GTT 3426 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 ||| | | ||||||||| ||| ||| |||||| || |||| || ||||| || | Sbjct 3427 ACC-AGCGCTTCAACCTGACCA-AGGGTAGATCACCAAGTTT-CGCGTCTACAGCC-ACT 3482 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA-TTCGG---TTAAGC 184 ||||| ||||||| | ||||||||||| |||| || |||| | ||| |||| | Sbjct 3483 GACTAATCGCCCTATTCAGACTCGCTTT-CGCTTCGGCTCCTGTTCTTCAAACATTAACC 3541 Query 185 TTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAA 244 || |||| | | ||| ||| | | |||||| ||||||| ||| ||||| | Sbjct 3542 TT-GCCAGTAACCGTAACTCGTAGGCTCATTATGCAAAAGGCACGACGTCACTTAC---- 3596 Query 245 GTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGG 304 ||||| | ||||||| || | ||||||| | |||||||||| || || || | Sbjct 3597 ----GCTCCGTCCGCTTGTAAGCGCATGGTTTCAAGTTCTATTTCACCCCGCTGCTCGCG 3652 Query 305 GTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGC 364 || |||||| |||||||||||||||||| |||||||||||||| |||| |||||||||| Sbjct 3653 GTACTTTTCACCTTTCCCTCACGGTACTCGTTCACTATCGGTCTCTCAGGAGTATTTAGC 3712 Query 365 CTTGGAGGATGGT 377 ||||| ||||||| Sbjct 3713 CTTGGCGGATGGT 3725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241484742272