Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq7844 82.4 9e-14 seq6588 82.4 9e-14 seq3206 82.4 9e-14 seq1533 78.8 1e-12 seq3466 73.4 5e-11 >seq7844 Length=1979 Score = 82.4 bits (90), Expect = 9e-14 Identities = 81/103 (79%), Gaps = 5/103 (5%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCC-TATTCTATTATTCCATGCTAATGTATTC---- 64 ||||||||||||||| || | || ||| ||||||||||||||||||||||| Sbjct 1869 AAACCAACAAAATAGACCACCAAGGCCGTATCTTATTATTCCATGCTAATGTATTCAAAT 1928 Query 65 GGGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAA 107 | || | ||||||||| |||||||||||||| ||| ||||| Sbjct 1929 GAGCAAACGCCTGCTTTAAACACTCTAATTTTTTCACAGTAAA 1971 >seq6588 Length=1248 Score = 82.4 bits (90), Expect = 9e-14 Identities = 81/103 (79%), Gaps = 5/103 (5%) Strand=Plus/Minus Query 10 AAACCAACAAAATAGGGACGCACGTCC-TATTCTATTATTCCATGCTAATGTATTC---- 64 ||||||||||||||| || | || ||| ||||||||||||||||||||||| Sbjct 111 AAACCAACAAAATAGACCACCAAGGCCGTATCTTATTATTCCATGCTAATGTATTCAAAT 52 Query 65 GGGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAA 107 | || | ||||||||| |||||||||||||| ||| ||||| Sbjct 51 GAGCAAACGCCTGCTTTAAACACTCTAATTTTTTCACAGTAAA 9 >seq3206 Length=6929 Score = 82.4 bits (90), Expect = 9e-14 Identities = 81/103 (79%), Gaps = 5/103 (5%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCC-TATTCTATTATTCCATGCTAATGTATTC---- 64 ||||||||||||||| || | || ||| ||||||||||||||||||||||| Sbjct 3309 AAACCAACAAAATAGACCACCAAGGCCGTATCTTATTATTCCATGCTAATGTATTCAAAT 3368 Query 65 GGGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAA 107 | || | ||||||||| |||||||||||||| ||| ||||| Sbjct 3369 GAGCAAACGCCTGCTTTAAACACTCTAATTTTTTCACAGTAAA 3411 >seq1533 Length=30587 Score = 78.8 bits (86), Expect = 1e-12 Identities = 80/103 (78%), Gaps = 5/103 (5%) Strand=Plus/Minus Query 10 AAACCAACAAAATAGGGACGCACGTCC-TATTCTATTATTCCATGCTAATGTATTC---- 64 ||| ||||||||||| || | || ||| ||||||||||||||||||||||| Sbjct 18781 AAAACAACAAAATAGACCACCAAGGCCGTATCTTATTATTCCATGCTAATGTATTCAAAT 18722 Query 65 GGGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAA 107 | || | ||||||||| |||||||||||||| ||| ||||| Sbjct 18721 GAGCAAACGCCTGCTTTAAACACTCTAATTTTTTCACAGTAAA 18679 >seq3466 Length=2958 Score = 73.4 bits (80), Expect = 5e-11 Identities = 77/99 (78%), Gaps = 2/99 (2%) Strand=Plus/Minus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||| |||| ||| || | |||| |||||||||||||||| | |||| ||| Sbjct 2809 AAACCAATAAAAGAGGACCGAAA-TCCTTTTCTATTATTCCATGCACAATCATTCAAGCG 2751 Query 70 -TAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAA 107 || ||||| |||| |||||| |||||||||| ||||| Sbjct 2750 ATACGCCTGTATTGAGCACTCTGATTTTCTCAAAGTAAA 2712 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595146474222