Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq2252 143 2e-32 seq1601 136 3e-30 seq3583 113 4e-23 seq1466 89.7 4e-16 >seq2252 Length=6434 Score = 143 bits (158), Expect = 2e-32 Identities = 129/161 (80%), Gaps = 1/161 (1%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||| ||| || ||||||| ||| || ||| ||||||| ||| | |||||||| Sbjct 4335 CGAGTTTCAGCCTGCAATCCGAACTGAGACCGGTTTTATGGGATTCGCTTCACCTCGCGG 4394 Query 62 GTTGGCGGCCCTCTGTATGTA-CCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 || || ||||||||||| |||||||| |||||||| ||||| | |||||| || Sbjct 4395 CTTCGCTGCCCTCTGTATCCGGCCATTGTAGGACGTGTGTAGCCCAGGGCGTAAGGGGCA 4454 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 ||| ||||||||||| ||||||||||||||||||||||||| Sbjct 4455 TGATGACTTGACGTCGTCCCCACCTTCCTCCGGTTTGTCAC 4495 >seq1601 Length=10388 Score = 136 bits (150), Expect = 3e-30 Identities = 129/162 (80%), Gaps = 2/162 (1%) Strand=Plus/Minus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 |||||||||||| | ||||||| ||| ||| |||| | ||||||||| | |||| Sbjct 1723 TCGAGTTGCAGAGTGCAATCCGAACTGAGATGG-CTTTTGGAGATTAGCTCGACATCGCT 1665 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 | | || |||| |||| ||||||||| ||||||| ||||| ||| ||||||||| Sbjct 1664 GTCTCGCTGCCCACTGTCACCACCATTGTAGCACGTGTGTAGCCCAGCCCGTAAGGGCCA 1605 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTC-CGGTTTGTCAC 161 |||||||||||||||||||||||||||||| ||| || |||| Sbjct 1604 TGAGGACTTGACGTCATCCCCACCTTCCTCTCGGCTTATCAC 1563 >seq3583 Length=2760 Score = 113 bits (124), Expect = 4e-23 Identities = 115/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 |||||||||||||| ||||| | ||| || | ||| || |||||||||| |||| Sbjct 1417 TCGAGTTGCAGACTCCAATCTGAACTGAGAGAAGGTTTTTGAGATTAGCTCCTTGTCGCC 1358 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 |||| || || ||| | |||||||| ||||||| |||||| ||||| ||||| Sbjct 1357 AAGTGGCAGCTCTTTGTCCTTCCCATTGTAGCACGTGTGTAGCCCTGGGCATAAAGGCCA 1298 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTC 150 ||| |||||||| |||||||| |||||||| Sbjct 1297 TGATGACTTGACATCATCCCCTCCTTCCTC 1268 >seq1466 Length=17362 Score = 89.7 bits (98), Expect = 4e-16 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 75 TGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGT 134 |||| || ||||||| ||||||| ||||| || |||||||||||||| |||||||||| Sbjct 12629 TGTAATTATCATTGTAGCACGTGTGTAGCCCAACTCATAAGGGCCATGAAGACTTGACGT 12570 Query 135 CATCCCCACCTTCC 148 ||||| |||||||| Sbjct 12569 CATCCTCACCTTCC 12556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415962589510