Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq1601 260 2e-67 seq2252 212 1e-52 seq3583 210 4e-52 seq6228 159 6e-37 >seq1601 Length=10388 Score = 260 bits (288), Expect = 2e-67 Identities = 227/282 (80%), Gaps = 0/282 (0%) Strand=Plus/Minus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 ||||||||||||| ||||||||||||| | | |||| || ||||||||||||||||||| Sbjct 1176 CCCACGCTTTCGCACCTCAGCGTCAGTAATGGACCAGTAAGCCGCCTTCGCCACTGGTGT 1117 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 ||||||| ||||||||| |||||||| |||||| ||||||||| || ||||| | || Sbjct 1116 TCCTCCGAATATCTACGAATTTCACCTCTACACTCGGAATTCCACTTACCTCTTCCATAC 1057 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACT 180 |||||| | |||| ||||| |||| | ||||||| | | |||||| |||||| Sbjct 1056 TCAAGATACCCAGTATCAAAGGCAGTTCCAGAGTTGAGCTCTGGGATTTCACCCCTGACT 997 Query 181 TGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG 240 | | |||||||| || |||||| |||| ||| |||| | |||||| ||| ||| || Sbjct 996 TAAATATCCGCCTACGTGCGCTTTACGCCCAGTAATTCCGAACAACGCTAGCCCCCTTCG 937 Query 241 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTC 282 |||||||||||||||||||||| ||||||||| ||||| ||| Sbjct 936 TATTACCGCGGCTGCTGGCACGAAGTTAGCCGGGGCTTCTTC 895 >seq2252 Length=6434 Score = 212 bits (234), Expect = 1e-52 Identities = 216/279 (77%), Gaps = 2/279 (1%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||||||||||| |||||||||||| | |||| || ||||||||| |||| ||| Sbjct 4884 CCCACGCTTTCGTACCTCAGCGTCAGGTGTGACCCAGAAAGTCGCCTTCGCTACTGATGT 4943 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 ||||||| ||||||||||||||||||||||||| ||||||||| || ||||| | | Sbjct 4944 TCCTCCGAATATCTACGCATTTCACCGCTACACTCGGAATTCCACTTTCCTCTATCACCC 5003 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATG-GGTTGAGCCCATAGTTTTCACATCTGAC 179 || || | | |||| || |||||| || || ||||||||| | ||| |||| ||| Sbjct 5004 TCTAGCAGACCAGTATCGAATGCA-TCTCTGAGGTTGAGCCTCAGGCTTTAACATTCGAC 5062 Query 180 TTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTAC 239 || |||||||| | |||||| |||| ||| |||| | ||||||||| ||| | Sbjct 5063 TTAATCCGCCGCCTACGTACGCTTTACGCCCAGTAATTCCGAACAACGCTTGCACCCTCC 5122 Query 240 GTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTT 278 || |||||||||||||||||||| ||||||||| |||| Sbjct 5123 GTCTTACCGCGGCTGCTGGCACGGAGTTAGCCGGTGCTT 5161 >seq3583 Length=2760 Score = 210 bits (232), Expect = 4e-52 Identities = 218/283 (77%), Gaps = 2/283 (1%) Strand=Plus/Minus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||||||||||| ||||||| |||| | ||| ||| | | |||||||| | |||||| Sbjct 869 CCCACGCTTTCGTGCCTCAGTGTCAATATATGTGTAGCCAGCTGCCTTCGCAATTGGTGT 810 Query 61 TCCTCCGT-ATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCA 119 || | || ||||||| |||||||||||||||| |||||| | |||| || | Sbjct 809 TC-TATGTCATATCTAAGCATTTCACCGCTACATGACATATTCCGCTAACCTCCACAATA 751 Query 120 CTCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGAC 179 |||||| || ||| |||| |||| | | ||| ||| | || |||||| ||||| Sbjct 750 TTCAAGACTAATAGTATCAATGGCAGTTTCCGAGTTAAGCTCGAAGATTTCACCACTGAC 691 Query 180 TTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTAC 239 || | ||| ||||| | ||||||| ||||||| |||||||||||||||||| ||| | Sbjct 690 TTACTAACCCACCTACGCACCCTTTAAACCCAATGAATCCGGATAACGCTTGCACCCTCC 631 Query 240 GTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTC 282 ||||||||||||||||||||||| ||||||||| |||||||| Sbjct 630 GTATTACCGCGGCTGCTGGCACGGAGTTAGCCGGTGCTTATTC 588 >seq6228 Length=1310 Score = 159 bits (176), Expect = 6e-37 Identities = 209/284 (74%), Gaps = 4/284 (1%) Strand=Plus/Minus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTT-ACTGTCCAGCAATCCGCCTTCGCCACTGGTG 59 |||||||||||| | ||||||||| | |||| || || | |||||||| | |||| Sbjct 1289 CCCACGCTTTCGTCCATCAGCGTCAATCCACTGGT-AGTAACCTGCCTTCGCAATTGGTA 1231 Query 60 TTCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGC- 118 |||| ||||||| ||||||||||||||||| |||| || | || || || Sbjct 1230 TTCCATGTAATATCTAAGCATTTCACCGCTACACTACATATTCTAGTTACTTC-CCGGCG 1172 Query 119 ACTCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGA 178 | ||||| |||| |||| |||| | ||||||| || |||||| |||| Sbjct 1171 ATTCAAGCCCTGCAGTATCAACGGCAGTTTCCCAGTTGAGCTGGGAGATTTCACCGCTGA 1112 Query 179 CTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTA 238 ||| | |||||||| ||||||| ||||||| | ||||||||||||||| ||| Sbjct 1111 CTTACAGGGCCGCCTACGGACCCTTTAAACCCAATGATTCCGGATAACGCTTGGATCCTC 1052 Query 239 CGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTC 282 |||||||||||||||||||||||| ||||||||| ||||||| Sbjct 1051 CGTATTACCGCGGCTGCTGGCACGGAGTTAGCCGATCCTTATTC 1008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828725466793