Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq2252 399 5e-109 seq1601 295 2e-77 seq6228 217 4e-54 seq3583 185 2e-44 seq1466 116 9e-24 seq3111 80.6 7e-13 >seq2252 Length=6434 Score = 399 bits (442), Expect = 5e-109 Identities = 338/411 (82%), Gaps = 10/411 (2%) Strand=Plus/Plus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 |||||| ||||| |||| || | |||||||| | ||||| |||||||| |||||||| Sbjct 5202 TTTACATACCGAAATACTTCATCCTCCACGCGGCGTCGCTGCGTCAGGCTTTCGCCCATT 5261 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5262 GCGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 5321 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 | ||| |||||||||||||||||||| |||||| | || |||| ||| ||||||| ||| Sbjct 5322 GACTGATCATCCTCTCAGACCAGCTAAGGATCGAAGTCTTGGTGAGCCTTTACCCCACCA 5381 Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTT-G 243 |||||||||||| | |||| ||||| ||||| |||||| |||||| |||||| |||| Sbjct 5382 ACTAGCTAATCCGACATGGGCTCATCTGATAGCGAGAGGTCCGAAGATCCCCCCCTTTCC 5441 Query 244 GTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGC 303 | | | || |||||||||||||| | |||| | ||| |||||| | | ||||| Sbjct 5442 CCCGTAGGGCG-TATGCGGTATTAGCGTTCCTTTCGAAACGTTGTCCCCCACTACCAGGC 5500 Query 304 AGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCT 363 || |||||| |||||||||||||||||| || || || | |||||||| | || Sbjct 5501 AGATTCCCATGTATTACTCACCCGTCCGCCGCT--GCATCG--GTAGCAAGCTACCTC-- 5554 Query 364 GTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 |||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 5555 --AACCGCTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 5603 >seq1601 Length=10388 Score = 295 bits (326), Expect = 2e-77 Identities = 310/411 (75%), Gaps = 34/411 (8%) Strand=Plus/Minus Query 4 CTTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63 |||||||| || ||| ||||| ||| ||||||||||||||| ||||||||||||||||| Sbjct 859 CTTTACAATCCTAAGACCTTCATCACTCACGCGGCATGGCTGGATCAGGCTTGCGCCCAT 800 Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123 ||| |||||||||||||||||||||||||||||||| ||| |||||||||||| ||| || Sbjct 799 TGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTTTGGGCCGTGTCTCAGTCCCAATG 740 Query 124 TGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCC 183 |||||| |||||||||||||||||||| |||||||||||| ||| |||| ||||||| || Sbjct 739 TGGCTGATCATCCTCTCAGACCAGCTATGGATCGTCGCCTTGGTAGGCCTTTACCCCACC 680 Query 184 AACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTG 243 ||||||||||||| | ||| |||||| | || | || | ||| | | | Sbjct 679 AACTAGCTAATCCAACGCGGGCTCATCCAACCCCGATA------AATCTTTCCCCCGTAG 626 Query 244 GTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGC 303 | ||| |||||||||||||| |||||||| ||||| || | || Sbjct 625 G----GCG----TATGCGGTATTAGCACACGTTTCCATGCGTTATTCCGTAGTAAAGGGT 574 Query 304 AGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCT 363 | |||||| | ||||||||||||| |||||| | ||| | Sbjct 573 ACGTTCCCACGCGTTACTCACCCGTCTGCCACT------------------CCCCTTGCG 532 Query 364 GTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 | |||||||||||||||||||| ||||||||||||||||| |||||| Sbjct 531 G--GGCGTTCGACTTGCATGTGTTAAGCCTGCCGCCAGCGTTCGTTCTGAG 483 >seq6228 Length=1310 Score = 217 bits (240), Expect = 4e-54 Identities = 164/192 (85%), Gaps = 1/192 (1%) Strand=Plus/Minus Query 5 TTTACAACCC-GAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63 |||||||||| || ||||||| || | ||||||||||||||| |||| |||||| |||| Sbjct 952 TTTACAACCCAGAGGGCCTTCATCCTCCACGCGGCATGGCTGGTTCAGACTTGCGTCCAT 893 Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123 || ||||||||| ||||||||||||||||||||||| || |||||||||||| || ||| Sbjct 892 TGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTCGGGCCCGTGTCTCAGTGCCCGTG 833 Query 124 TGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCC 183 || |||||| | |||||| ||||| || |||||| | || |||||||| |||||||||| Sbjct 832 TGACTGGTCGTGCTCTCACACCAGTTACTGATCGTGGACTTGGTGGGCCGTTACCCCGCC 773 Query 184 AACTAGCTAATC 195 ||||| |||||| Sbjct 772 AACTATCTAATC 761 >seq3583 Length=2760 Score = 185 bits (204), Expect = 2e-44 Identities = 299/425 (70%), Gaps = 34/425 (8%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGG-CCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63 |||||||||| ||| || || || | ||||||| ||||||| |||||||| | ||||| Sbjct 532 TTTACAACCCATAGGGCCGTCGTCCTTCACGCGGGATGGCTGGATCAGGCTCTCACCCAT 473 Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123 ||| ||||||||| |||||||||||||||||||||||||| |||||||||||| |||||| Sbjct 472 TGTCCAATATTCCTCACTGCTGCCTCCCGTAGGAGTCTGGTCCGTGTCTCAGTACCAGTG 413 Query 124 TGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCC 183 ||| | || |||||||| | ||| ||||| |||| ||| ||| ||||| || Sbjct 412 TGGGGGATCTCCCTCTCAGGACCCCTACCCATCGTTGCCTTGGTAAGCCGTTACCTTACC 353 Query 184 AACTAGCTAAT----CCCATCTGGGTTCATCCGATAGTG-AGAGGCCCGAAGGTCCCCCT 238 ||||||||||| | ||| | ||||| || | | | | || | Sbjct 352 AACTAGCTAATGGGACGCAT----GCTCATCTTTTACCGTTGTGACTTTAA-------TT 304 Query 239 CTTTGGTCTTGCGAC--------GTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCC 290 || || ||| || ||| ||||||| | |||| || ||||| Sbjct 303 ATTAAGTGATGCCACTCAATAATACCATGGGGTATTAATCCAAATTTCTCTGGGCTATCC 244 Query 291 CCCTCCATCAGGCAG-TTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCA 349 |||| | ||| || || | | | |||| ||||||| |||| || ||| ||| | Sbjct 243 CCCTGTAAAAGGTAGATTGCATACGCGTTACGCACCCGTGCGCCGGTC-TCA---AAGGA 188 Query 350 GCAAGCTGCTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAAT 409 ||||||| |||| |||| ||||||||||||||||||||||||||| |||||||| Sbjct 187 GCAAGCTCCTTC----TACCCCTCGACTTGCATGTGTTAGGCCTGCCGCTAGCGTTCATC 132 Query 410 CTGAG 414 ||||| Sbjct 131 CTGAG 127 >seq1466 Length=17362 Score = 116 bits (128), Expect = 9e-24 Identities = 139/186 (75%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 4 CTTTACAACCCGAAG-GCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCA 62 |||||||||| | ||| |||||| ||| ||| || |||| |||| |||| ||| || Sbjct 11855 CTTTACAACCTAATTAGCCGTCTTCACTCACTCGGTATTGCTGGATCAAGCTTTCGCTCA 11796 Query 63 TTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 122 |||| ||| ||||||||||||||||| | ||| ||| |||||||||||| ||| | Sbjct 11795 TTGTCCAAAATTCCCCACTGCTGCCT-TTAAAAAAGTTTGGGCCGTGTCTCAGTCCCAAT 11737 Query 123 GTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGC 182 ||||||| |||| || ||| |||||||| ||| | || ||| | | |||| | | Sbjct 11736 GTGGCTGATCATTCTTTCAAACCAGCTAAAGATAAGAGGCTTGGTAGTCTATTAAACAAC 11677 Query 183 CAACTA 188 |||||| Sbjct 11676 CAACTA 11671 >seq3111 Length=4339 Score = 80.6 bits (88), Expect = 7e-13 Identities = 82/106 (77%), Gaps = 1/106 (1%) Strand=Plus/Minus Query 20 CCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCA 79 || |||||| ||| ||| || |||| |||| |||| ||| |||||| | | |||||||| Sbjct 105 CCGTCTTCACTCACTCGGTATTGCTGGATCAAGCTTTCGCTCATTGTCCGAAATTCCCCA 46 Query 80 CTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTG 125 ||||||||| | ||| ||| |||||||||||| ||| |||| Sbjct 45 CTGCTGCCT-TTAAAAAAGTTTGGGCCGTGTCTCAGTCCCAATGTG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222286524608