Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq1601 527 2e-147 seq4110 383 6e-104 seq3065 356 8e-96 seq2252 251 2e-64 seq2933 141 3e-31 seq692 102 3e-19 >seq1601 Length=10388 Score = 527 bits (584), Expect = 2e-147 Identities = 420/498 (84%), Gaps = 8/498 (2%) Strand=Plus/Plus Query 1 TCGAGTCCGAACAGGGCGAC--AGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCC 58 ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| || Sbjct 3425 TCGAGTCCGAATAGGGCGAATTAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTATCC 3484 Query 59 ATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAA 118 ||||||||||||||||||| |||||| | |||||||||||||||||| ||||||||||| Sbjct 3485 ATGGCCAGGATGAAGGTGCCGTAACAGGTACTGGAGGTCCGAACCCACAAATGTTGAAAA 3544 Query 119 ATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTC 178 ||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| Sbjct 3545 ATTTGGGGATGAGCTGTGGATAGGGGTGAAAGGCTAAACAAACTTGGAGATAGCTGGTTC 3604 Query 179 TCTCCGAAAACTATTTAGGTAGTGCCTCAAGTATCACCATCGGGGGTAGAGCACTGTTAT 238 |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct 3605 TCTCCGAAAACTATTTAGGTAGTGCCTCGTATATCATTCTCGGGGGTAGAGCACTGTTAT 3664 Query 239 GGCTAGGGGG-TCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCAGTTTT 297 |||||||||| |||| |||||||||||||||||||||||||||| | | | | Sbjct 3665 GGCTAGGGGGTTCATAAGAACTTACCAAACCATTGCAAACTCCGAATACTGAGAAATGCA 3724 Query 298 ACCGCGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACT 357 | |||||| || |||||||||||| ||||||| | ||||| || || || ||| Sbjct 3725 ATTACGGGAGACAGTCCATGGGTGCTAACGTCCGTGGACAAGAGGGAAACAACCCAGACC 3784 Query 358 ATCAGCTAAGGCCCCGAAATGAC-AGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGAC 416 ||||||||| ||| ||||||| ||||||| || |||||||| || || |||| Sbjct 3785 GACAGCTAAGGTCCC-AAATGACGTGCTAAGTGGAA--AACGAAGTGGGAAGGCATAGAC 3841 Query 417 AGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGT 476 ||| ||||||||||||| |||||||||| ||||||||||| |||||| |||||||| || Sbjct 3842 AGCCAGGATGTTGGCTTAGAAGCAGCCA-TCATTTAAAGAAAGCGTAATAGCTCACTGGT 3900 Query 477 CGAGGAGTCGGGCGTGGA 494 |||| ||| ||| ||| Sbjct 3901 CGAGTCGTCCTGCGCGGA 3918 >seq4110 Length=2169 Score = 383 bits (424), Expect = 6e-104 Identities = 410/532 (77%), Gaps = 11/532 (2%) Strand=Plus/Minus Query 2 CGAGTCCGAACAGGGCGAC--AGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCA 59 |||||| ||| |||||| |||| | | ||||| ||||||| |||||||||||| Sbjct 1267 CGAGTCTGAATAGGGCGCTTTAGTCAGTAGTGTTAGACGCGAAACCGTGTGATCTACCCA 1208 Query 60 TGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAA 119 ||| |||| ||||| || |||||||| | |||||| ||||||| | | |||||||| Sbjct 1207 TGGGCAGGTTGAAGCTGTGGTAACACACAGTGGAGGACCGAACCGGTTGACGTTGAAAAG 1148 Query 120 TTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCT 179 | |||||| ||||||||||||||||||||| || |||||| |||||||||| || || Sbjct 1147 TCTTCGGATGACCTGTGGGTAGGGGTGAAAGGCCAATCAAACTCGGAAATAGCTCGTACT 1088 Query 180 CTCCGAAAACTATTTAGGT--AGTGCCTCAAGTATCACCAT-CGGGGGTAGAGC-ACTGT 235 | |||||| |||||||| || || ||| || | | |||||||| |||| Sbjct 1087 CCCCGAAATGCATTTAGGTGCAGCGCTGGCCGTAAAGTTATACAGAGGTAGAGCTACTGA 1028 Query 236 TATGGCTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGC-GCATCAGT 294 | ||| | |||| | | | | |||||| | | |||||||||||||| | || | Sbjct 1027 T-TGGATGCGGGGGCTTCACCGCCTACCAATTCCTGACAAACTCCGAATGCTGTATAATG 969 Query 295 TTTACCGCGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGG 354 ||| || | ||||||||| ||||||||||||||| | |||||||| ||||| || | Sbjct 968 TTTGCCA--GCAGTGAGGGCTTGGGTGCTAAGGTCCAAGTCCGAGAGGGAAAGAACCCAG 911 Query 355 ACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAG 414 || ||||||||||| ||| |||| |||||||| || ||||| || || ||| || Sbjct 910 ACCATCAGCTAAGGTCCCCAAATATATGCTAAGTTGAAAGAACGAGGTTTGTCTGCCCAG 851 Query 415 ACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTA 474 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 850 ACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTA 791 Query 475 GTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTGTCTACCGAAGC 526 |||||| | || || ||||||||||||||| || || | | ||||||||| Sbjct 790 GTCGAGCGGACGAGCATGGATAATAATCGGGCATAAACATAT-TACCGAAGC 740 >seq3065 Length=3725 Score = 356 bits (394), Expect = 8e-96 Identities = 429/571 (75%), Gaps = 17/571 (3%) Strand=Plus/Minus Query 2 CGAGTCCGAACAGGGCGAC-AGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCAT 60 |||||| ||| ||||||| |||| ||| ||||||| |||||| ||||||||||| | Sbjct 3506 CGAGTCTGAATAGGGCGATTAGTCAGTGGCTGTAGACGCGAAACTTGGTGATCTACCCTT 3447 Query 61 GGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAAT 120 || |||| ||||| |||||||| | |||||| ||||||| || |||||||| | Sbjct 3446 GGTCAGGTTGAAGCGCTGGTAACACATCGTGGAGGACCGAACCGGTAAACGTTGAAAAGT 3387 Query 121 TAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTC 180 | |||||| ||| ||||||||||||||||| || |||||| ||||||||| || ||| Sbjct 3386 TTTCGGATGAACTGAGGGTAGGGGTGAAAGGCCAATCAAACTGAGAAATAGCTCGTACTC 3327 Query 181 TCCGAAAACTATTTAGGTAGTGCCTCAAGTATCA-CCAT-CGGGGGTAGAGC-ACTGTTA 237 |||||| | |||||| | || || | | | ||| |||||||| |||| || Sbjct 3326 CCCGAAATGTTTTTAGGAACAGCGTCGTGGTTGAGTCATGTTCAGGTAGAGCTACTGATA 3267 Query 238 TGGCTAGGGGGTCATTGCGA-CTTACCAAACCATTGCAAACTCCGAAT-GCGCATCAGTT 295 |||||||||| | | | | |||||||| | |||||||||||| | |||| | | Sbjct 3266 GGGCTAGGGGG--AGTCAAATCCTACCAAACTCTGACAAACTCCGAATGGGGCAT--GAT 3211 Query 296 TTACCGCGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGA 355 || | ||| ||||||||| |||||||||||||| | |||||||| ||| || || || Sbjct 3210 ATA-CACGGCAGTGAGGGCTGGGGTGCTAAGGTCCCAGTCCGAGAGGGGAACAACCCAGA 3152 Query 356 CTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGA 415 ||||||||||| ||| |||| |||||||| |||||| | ||| || ||| ||| Sbjct 3151 GCATCAGCTAAGGTCCCAAAATATATGCTAAGTTGAACTAAGGGGGTCCGACTGCAGAGA 3092 Query 416 CAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAG 475 |||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||| | Sbjct 3091 CAGCCAGGATGTTTGCTTGGAAGCAGCAATTCATTTAAAGAGTGCGTAACAGCTCACTGG 3032 Query 476 TCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTGTCTACCGAAGCAGTGGGAT- 534 ||||| ||| || ||| |||||||||| || || | |||||||| | ||| Sbjct 3031 TCGAGAGGTCCCGCACGGAAAATAATCGGGCATCAAACCATGAACCGAAGCTCTATGATT 2972 Query 535 -CATTTATATG----ATCGGTAGGGGAGCAT 560 | || || |||||||||||||||| Sbjct 2971 GCCACTAGGTGGTATATCGGTAGGGGAGCAT 2941 >seq2252 Length=6434 Score = 251 bits (278), Expect = 2e-64 Identities = 354/487 (73%), Gaps = 14/487 (3%) Strand=Plus/Minus Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTG---TAGACCCGAAACCAAGTGATCTACCC 58 |||||| ||| ||||||| | | || ||| |||||||||| ||| | |||||| || Sbjct 2941 CGAGTCTGAATAGGGCGATTTTAGTTGTGTGCTGTAGACCCGAACCCAGGCGATCTAGCC 2882 Query 59 ATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAA 118 ||||||||||||||| ||| |||| | ||||||||||||||||| ||||||||||| Sbjct 2881 ATGGCCAGGATGAAGCGCAGGTGACACTGCGTGGAGGTCCGAACCCACGAATGTTGAAAA 2822 Query 119 ATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTC 178 ||| ||||||||||||||| ||| ||||||| | || | | | |||| || ||||||| Sbjct 2821 ATTCGGGGATGAGCTGTGGCTAGCGGTGAAATTCCAATCGAGCCTGGAGCTATCTGGTTC 2762 Query 179 TCTCCGAAAACTATTTAGGTAGTGCCTCAAGT--ATCACCATCGGGGGTAGAGCACTGTT 236 || ||||| |||||| ||||| ||| | |||||||||||||||| | Sbjct 2761 TCCTCGAAATGGCTTTAGGGTCAGCCTCGAGTTAAAGTTTGTCGGGGGTAGAGCACTAGT 2702 Query 237 ATGGCTAGGGGGTCATTGC--GACTTACCAAACCATTGCAAACTCCGAATGCGCATCAGT 294 ||| | | ||| || | | | ||||||| | | ||||||||||| | | Sbjct 2701 -TGGGT-GCGGGGGATGACATGTCCTACCAAATCCTATTAAACTCCGAATACCGACGTAA 2644 Query 295 TTTACCGCGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGG 354 | | || |||||||||| | ||| | |||| |||||| ||||||| || | || | Sbjct 2643 TGTTCCTCGGGAGTGAGACTACGGGAGATAAGTTCCGTGGTCGAGAGGGAAACAGCCCAG 2584 Query 355 ACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGA-TTGCTAA 413 | |||||||||||||| || | | ||||||| | ||| || || ||| | | | Sbjct 2583 ATCGTCAGCTAAGGCCCCTAAGTCATCGCTAAGT--GATTAAGGAGGT-TGAGTCACAGA 2527 Query 414 GACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACT 473 |||| | |||| |||||||| ||||||| || | || ||||||||||||| |||||||| Sbjct 2526 GACAACCAGGAGGTTGGCTTAGAAGCAG-CAACCCTTGAAAGAGTGCGTAATAGCTCACT 2468 Query 474 AGTCGAG 480 ||| || Sbjct 2467 GGTCAAG 2461 >seq2933 Length=8488 Score = 141 bits (156), Expect = 3e-31 Identities = 309/453 (68%), Gaps = 15/453 (3%) Strand=Plus/Minus Query 34 AGACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGA 93 ||||||||||| ||||||||| ||||| ||| |||| ||||| || || | Sbjct 2309 AGACCCGAAACTGAGTGATCTAACCATGAACAGATTGAAAAATAGGTAAAACTATTTGAA 2250 Query 94 GGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCT 153 || ||||| ||| |||| | ||||| || ||||| ||||| |||| |||||||||| Sbjct 2249 GGATCGAACTCACATATGTGGCAAAATATGGAGATGATTTGTGGTTAGGAGTGAAAGGCT 2190 Query 154 AAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGCCTCAAGTATC 213 || |||||| || |||||||||| || ||||| ||||| | |||| || | | ||| Sbjct 2189 AATCAAACTCAGAGATAGCTGGTTTTCCGCGAAATCTATTGAAGTAGAGCATTTAAAATC 2130 Query 214 ACCATCGGGGGTAGAGCACTGTTATGGCTAGGGGGTCATTGCGACTTACCAAACCATTGC 273 | ||||||||||||| | |||| ||||| | |||||| ||| || Sbjct 2129 TTTTTTTGGGGTAGAGCACTCATTGAGCTAAGGGGT-GTAAAAACTTACTAAATTCTTAG 2071 Query 274 AAACTCCGAATGCGCATCA--GT--TTTACCGCGGGAGTGAGGGCATGGGTGCTAAGGTC 329 ||||||||||| | | | || |||| || || | || ||||||||| Sbjct 2070 AAACTCCGAATACAAAAAAACGTAATTTA----AATAGACAGACATTAGGCGCTAAGGTC 2015 Query 330 CGTGCCCGAGAGGAGAAGAATCCGGACT-ATCAGCTAAGGCCCCGAAATGACA-GCTAAG 387 | | | ||| || | || || | ||| | ||||| | | |||| | | ||||| Sbjct 2014 TTTTGTCAAAAGGGAAACAGCCCAGATTGATC-GTTAAGGTCTCAAAATAATATTCTAAG 1956 Query 388 TTAAACTAACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTC 447 | ||| || ||||| | || ||| | || | || ||||||||||||||||||| Sbjct 1955 TGAAA--AAGGAAGTGAAAAAATTATTACAACCAGTAGGTAGGCTTGGAAGCAGCCATTC 1898 Query 448 ATTTAAAGAGTGCGTAACAGCTCACTAGTCGAG 480 |||||||| |||||| |||||||| ||| || Sbjct 1897 -TTTAAAGAAAGCGTAATAGCTCACTGGTCTAG 1866 >seq692 Length=31027 Score = 102 bits (112), Expect = 3e-19 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 34 AGACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGA 93 ||||||||||| |||||| | ||||| ||| | || ||||| || || | Sbjct 19135 AGACCCGAAACTGAGTGATTTGACCATGAACAGATTTAAAAATAGGTAAAACTGTTTGAA 19076 Query 94 GGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCT 153 || ||||||||| |||| | ||||| || ||||| ||||| |||| |||||||||| Sbjct 19075 GGATCGAACCCACATATGTGGCAAAATGTGGAGATGATTTGTGGTTAGGAGTGAAAGGCT 19016 Query 154 AAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGCCTCAAGTATC 213 | |||||| || |||||||||| || ||||| || | | |||| || | | ||| Sbjct 19015 ACTCAAACTCAGAGATAGCTGGTTTTCCGCGAAATCTGTCGAAGTAGAGCATTTAAAATC 18956 Query 214 ACCATCGGGGGTAGAGCACTGTTATGGCTAGGGGGT 249 | | ||||||||||||| | |||| ||||| Sbjct 18955 TTCTTTTGGGGTAGAGCACTCATTGAGCTAAGGGGT 18920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689443154432