Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq1601 248 2e-63 seq4110 136 7e-30 seq3583 132 9e-29 seq2252 93.3 8e-17 >seq1601 Length=10388 Score = 248 bits (274), Expect = 2e-63 Identities = 254/323 (79%), Gaps = 8/323 (2%) Strand=Plus/Plus Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60 |||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||| | Sbjct 2812 AGTGCATATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTGATAGCCTGCGAAA 2871 Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGC 120 |||| ||||||| ||||| | |||||||||| |||| ||||||||||||||||| | Sbjct 2872 AGCTTCGGGGAGCTGGCAAATAAGCTTTGATCCGGAGATGTCCGAATGGGGAAACCCACC 2931 Query 121 CCTTTGGGTCATTGCATGCTGAATACATAGG--TATGCAAAGCGAACGCGGCGAACTGAA 178 | |||| | || | ||||||| ||||| ||| |||||| | |||||||| Sbjct 2932 CGCAAGGGTAACCGC-TCCTGAATATATAGGGAGATG-GTGGCGAACCGAGTGAACTGAA 2989 Query 179 ACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAA 238 |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| Sbjct 2990 ACATCTAAGTAGCTCGAGGAAAAGAAATCAACCGAGATTCCGTAAGTAGTGGCGAGCGAA 3049 Query 239 ATGGGATGAGCCT-TTACGAGATAGTTGAATTGATAGTGGAATCCTCTGGAAA-TAGGAG 296 ||| ||||| |||| ||| || |||||| ||| |||||| | || Sbjct 3050 CATGGAACAGCCTGTTAC-TTTTAGCAGACGCGATAGTAGAACGGAATGGAAAGTCCGA- 3107 Query 297 CCATAGCGGGTGATAGCCCCGTA 319 || ||| ||||||||| |||||| Sbjct 3108 CCGTAGTGGGTGATAGTCCCGTA 3130 >seq4110 Length=2169 Score = 136 bits (150), Expect = 7e-30 Identities = 179/246 (73%), Gaps = 18/246 (7%) Strand=Plus/Minus Query 8 ATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCG 67 |||| |||||||| ||| | | |||||| ||||||||| || ||||| |||||||| Sbjct 1906 ATGGGGGATGCCTAGGCTCTCAGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTGCG 1847 Query 68 GGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCC--GGCCCTTT 125 |||| | ||| |||| ||||||||||||| ||||||||||| ||||| | || Sbjct 1846 GGGA-CGGGCACACACCGATTGATCCGCAGATATCCGAATGGGGCAACCCAGTGTACTGA 1788 Query 126 GGGT-CATTGCATGCTGAATACATAGGTATGCAAAGCGAACGCGGCGAACTGAAACATCT 184 ||| |||| | | ||||| |||||| || |||||||||||||| Sbjct 1787 AGGTACATTACCCG--------ATAGG------GGGCGAACCCGCTGAACTGAAACATCT 1742 Query 185 AAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGA 244 |||||| | |||| |||||| ||| | |||||| ||||||||||||||||| ||| Sbjct 1741 AAGTAGGCGGAGGAGAAGAAAACAAAAGTGATTCCGTGAGTAGTGGCGAGCGAAAGCGGA 1682 Query 245 TGAGCC 250 | |||| Sbjct 1681 TTAGCC 1676 >seq3583 Length=2760 Score = 132 bits (146), Expect = 9e-29 Identities = 184/253 (73%), Gaps = 15/253 (6%) Strand=Plus/Plus Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60 || || ||||||||||||||||| | | |||||| ||||||||| ||| ||||||| Sbjct 2425 AGGGCGCATGGTGGATGCCTTGGGTCTGAGAGGCGAAGAAGGACGTGGTAAGCTGCGATA 2484 Query 61 AGCTGCGGGGAGTGA-GCAAACACACTTTG-ATCCGCAGATTTCCGAATGGGGAAACCCG 118 ||| | || || | ||| ||| | || |||| |||||||||||||| |||||| Sbjct 2485 AGC--CAGGAAGAGCTGCACACAAGCATTATATCCCTGGATTTCCGAATGGGTCAACCCG 2542 Query 119 GCCCTTTGGGTCATTGCATGCTGAATACATAGGTATGCAAAGCGAACGCGGCGAACTGAA 178 | | ||| | | | || || | | | | ||| ||| ||| |||||||| Sbjct 2543 GTACGTTG---------AAGACGTAT-CACTCGAAAG-AGAGCCAACCCGGAGAACTGAA 2591 Query 179 ACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAA 238 ||||||||||| | | ||||||||||| || ||||||| |||||||||||||||| Sbjct 2592 ACATCTAAGTACCCGGAGGAAAAGAAAATAATAATGATTCCCTGAGTAGTGGCGAGCGAA 2651 Query 239 ATGGGATGAGCCT 251 |||||| |||||| Sbjct 2652 ATGGGAAGAGCCT 2664 >seq2252 Length=6434 Score = 93.3 bits (102), Expect = 8e-17 Identities = 178/259 (69%), Gaps = 9/259 (3%) Strand=Plus/Minus Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60 || || || || |||| ||| || | | ||| ||||||||||||| | || ||||||| Sbjct 3647 AGGGCGCACGGGGGATCCCTAGGTGCTGTCAGCCGATGAAGGACGTTGCAGGCTGCGATA 3588 Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGC 120 || | | ||| ||| | | |||| | | || |||||||| |||||| | | Sbjct 3587 AGTTAGGACGAGCTGCCAAGCGAGCGTTGACTCCTAAATGTCCGAATGAGGAAACTCA-C 3529 Query 121 CCT----TTG---GGTCATTGCATGCTGAATACATAGGTATGCAAAGCGAACGCGG-CGA 172 ||| ||| || | | |||| |||| |||||| ||| | | | |||| ||| Sbjct 3528 CCTGGTGTTGCCAGGGTACTCCATGATGAACACATAGTCATGTGAGAGGTAAGCGGGCGA 3469 Query 173 ACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCG 232 | |||||||||| |||||| |||||| ||| || || |||| ||||| |||| Sbjct 3468 ATTGAAACATCTTAGTAGCCCGAGGAAAGAAAAGTAAGAACGACTCCCTGAGTAGCGGCG 3409 Query 233 AGCGAAATGGGATGAGCCT 251 |||||| ||||||||||| Sbjct 3408 AGCGAACGGGGATGAGCCT 3390 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918314744928