Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_009552.2 Length=40863 Score E Sequences producing significant alignments: (Bits) Value seq1773 120 8e-23 >seq1773 Length=8977 Score = 120 bits (132), Expect = 8e-23 Identities = 410/633 (65%), Gaps = 12/633 (2%) Strand=Plus/Plus Query 37708 AGACCGAACGGGCGTCGGCACGCTGTCGGTGTTCGGCCGCCAGCTCCGCTTCAACTTACA 37767 |||||| || ||| ||||| | || || || ||| |||| | ||||| || | Sbjct 8178 AGACCGTACCGGCACGGGCACTATTTCTGTATTTGGCTACCAGATGCGCTTTGACCTGGC 8237 Query 37768 AGATGGATTTCCGCTCGTGACAACGAAAAAATTGCATATCCGCTCCATCATTTATGAACT 37827 || || || || | | || || |||||| | ||| || || |||||| | ||| | Sbjct 8238 TGAAGGGTTCCCCTTACTCACCACCAAAAAAGTCCATCTCAAGTCGATCATTCACGAATT 8297 Query 37828 GCTTTGGTTTTTAAAAGGCGATACGAACGTCCGCTATTTGCAGGAGAATGGCGTGACGAT 37887 ||| ||||| || | ||| ||| || | ||| | |||| || ||||| | || Sbjct 8298 GCTCTGGTTCTTGCAGGGCAGTACCAATATTGCATATCTCAAGGAAAACGGCGTCAGCAT 8357 Query 37888 TTGGGATGAGTGGGCGGACGAAAACGGCGATCTCGGCCCGATTTACGGCGCGCAATGGCG 37947 ||||||||||||||| || | | ||| | || || || | || ||| || ||||| Sbjct 8358 TTGGGATGAGTGGGCAGATGCCGAAGGCAACCTTGGTCCAGTGTATGGCTACCAGTGGCG 8417 Query 37948 CTCGTGG---AAGGGAGCAGACGGGAAAACCATCGACCAGATCGCATGGGTTGTCGAAGA 38004 | ||| ||| | || || | |||||||||||| | || | || | Sbjct 8418 CAACTGGCCTAAG---CCTGATGGCAGCCATATCGACCAGATCACCCAAGTGATTGAGCA 8474 Query 38005 GATCAAACGAAATCCGCATTCACGCCGGCTGCTGGTGAGCGCTTGGAATGTAGCAGAATT 38064 ||| ||||| | || ||||||| || ||| | ||| || |||||||| || || | Sbjct 8475 GATTAAACGCACACCTGATTCACGTCGCCTGATCGTGTCGGCATGGAATGTGGCGGATGT 8534 Query 38065 GGACGAGATGAAGCTGCCGCCGTGTCATTACGCCTTTCAGTTCTATGTCGCCAACGGCCG 38124 || |||||||| ||||| || ||| |||||||| ||||| ||| | ||| Sbjct 8535 CGAACGCATGAAGCTTCCGCCTTGCCATGCTTTTTTTCAGTTTTATGTTGCCGATGGCAA 8594 Query 38125 GTTGTCATGCATGTGGCAGCAGCGCTCCGTTGATACGTTTTTAGGGTTGCCGTTTAACAT 38184 ||||||||| || | | |||||| | ||||| || | || |||| || || || Sbjct 8595 ATTGTCATGCCAGTTGTACCAGCGCAGTGCTGATATTTTCCTGGGCGTGCCTTTCAATAT 8654 Query 38185 CGCGAGCTACGCGCTGTTGACGCAT-ATGGTAGCCCAACAATGCGACTTGGATGTCGGTG 38243 || ||||| ||||||| ||| ||||| || || |||| ||| | |||| | Sbjct 8655 TGCTTCATACGCCTTGTTGAC-CATGATGGTGGCACAGGTTTGCGGATTGCAACTCGGAG 8713 Query 38244 AACTCATTTTCACCGGC--GGCGACGTCCATTTGTACAAAAATCATCTGGAACAAGCGAA 38301 | | | | ||| || ||||| | ||| | |||| |||||| || ||| | ||| Sbjct 8714 A--TTTTGTGCACACGCTGGGCGATGCGCATATTTACAGCAATCATATGACACAGGTGAA 8771 Query 38302 ACTGCAGCTGACGCGCGAGCCGCGCCCGCTGCC 38334 | ||| || | ||| ||| | ||||||| Sbjct 8772 AGAGCAATTGTCTCGCACGCCAAGATCGCTGCC 8804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130625598817950