Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq69 228 6e-55 seq179 158 1e-33 seq5172 102 6e-17 >seq69 Length=63067 Score = 228 bits (252), Expect = 6e-55 Identities = 577/857 (67%), Gaps = 39/857 (5%) Strand=Plus/Plus Query 61090 TGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCC 61149 |||| |||||||| |||||||||||||| |||||||| | |||||| | || ||| Sbjct 12557 TGGCAGATGTACAAGAAGGCGGAAGCTTCGTTCTGGACTGCTGAGGAGCTAGACTTGGTG 12616 Query 61150 AAAGACATGAATGACTGGGAGCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTG 61209 | || | || ||||||| | | || | ||| | || || || || |||||| Sbjct 12617 CACGATCTCAAGGACTGGGCGAACCTCACGGACAATGAGCGTCACTTTATCAAGCATGTG 12676 Query 61210 TTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTT----ATTGGAACGTTT 61265 | || |||||||| || || || || || || |||||| | || |||| ||| Sbjct 12677 CTCGCCTTCTTTGCAGCCAGTGATGGCATTGTGAACGAGAATCTGGCCAT--GAAC-TTT 12733 Query 61266 CGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGA 61325 || | || ||||||||| |||| || || || || || ||||||||||| || || || Sbjct 12734 AGCA-ATGAAGTGCAAGTGCCGGAAGCTCGGTGCTTTTATGGCTTCCAGATCGCGATTGA 12792 Query 61326 GAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGA 61385 || |||||||||| | || | ||||| || |||||||| | ||| | |||| Sbjct 12793 AAACATCCACTCGGAAGTCTATTCGCTGCTCATTGACACGTACATTAAAGAGGCGACGGA 12852 Query 61386 ACGTGAACGATTG--TTCAATGCC--ATCGAGACGATACCGGCGGT--GAAGCGGAAAGC 61439 ||| ||| ||| || || ||||| || ||| || ||| |||||| Sbjct 12853 ----GAAGGATCACCTTCTGCGCGCGATTGAGACCATCCCGTGTGTTCGAAA--GAAAGC 12906 Query 61440 GGATTGGGCCTTCAATTGGATC-ACCAGTACAACGG-CTACATTTGGTGAACGATTGCTG 61497 ||||||| |||| ||| | ||| |||| || | | | || || ||||| Sbjct 12907 CAATTGGGCGCTCAAGTGGTGCGACCC--ACAAGTATCTTCGTACGCGGAGCGGCTGCTG 12964 Query 61498 GCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTG 61557 |||||||| |||||| || | || ||| || ||||| | | ||||||||| || Sbjct 12965 GCATTTGCCTCGGTCGAAGGCATTTTCTTCTCGGGCTCGTTCTGCTCGATCTTTTGGCTG 13024 Query 61558 AAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAG 61617 ||||| || || || ||||| || || | |||| || ||| | || || || ||| Sbjct 13025 AAGAAGCGCGGTCTCATGCCTGGCCTCAGCTTCTCGAACGAGCTCATTAGTCGAGATGAG 13084 Query 61618 GGCATGCATTGTGATTTTGC-TGTTT--TGCTATTCAAACGCTATCTGGTGAATCGTCCG 61674 |||||||| || ||||| || | || || || || |||| ||||| | | Sbjct 13085 GGCATGCACACGGACTTTGCGTGCCTCATG-TACTCCAA-GCTA----GTGAACAAGCTG 13138 Query 61675 TCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTG 61734 | ||||| || || ||| |||| || || || || ||||| || || ||| || Sbjct 13139 CCCGAGGACCGCGTCCACACGATCATTCGCGACGCAGTGACGATCGAGCACGAGTTTGTG 13198 Query 61735 ACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATT 61794 ||| | ||||||| || || |||||||| | | || |||| ||||| ||| Sbjct 13199 CGGGACTCGCTGCCCGTTGAGCTGATTGGCATGAACTCGGCGCTCATGTGCCAGTACATT 13258 Query 61795 GAATTTGTTGCCGACCGTCTGTTGG--TCGATTTGGGTAT-GAAGCGGATCTATAATACG 61851 || ||||| || ||||| |||||| ||| | | || | |||| || | || | Sbjct 13259 GAGTTTGTAGCGGACCGCCTGTTGTACTCGCTCGGCGTGTCGAAG---ATTTTCCATGCA 13315 Query 61852 AAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAG 61911 || ||||||||||| | ||||||||||| ||||| | ||||||||||| ||||||||| Sbjct 13316 AAGAACCCATTTGACTGGATGGACATGATCTCGCTTCAGGGCAAGACGAACTTTTTCGAG 13375 Query 61912 AAACGTGTAGGCGACTA 61928 || ||||| ||||| || Sbjct 13376 AAGCGTGTGGGCGAGTA 13392 >seq179 Length=46302 Score = 158 bits (174), Expect = 1e-33 Identities = 777/1219 (64%), Gaps = 37/1219 (3%) Strand=Plus/Plus Query 65435 AACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTCA 65494 |||||||| | ||| || || ||| || || || |||||| || |||| || || Sbjct 20886 AACTCGCCAGCCAGCACGCGGCGGTTGTACATATTCGACGTGTACGGCTCAATCGACTCG 20945 Query 65495 GTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGTTT 65554 ||||||| ||||| ||||| || || || || ||||| || || || | || ||||| Sbjct 20946 TTGTTGCCCAGAATCTGGGCCGTCGAAGCCGTCGGCATTGGCGCCACGAGCAGAGAGTTG 21005 Query 65555 CGCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCAGTTCCACATCGGTTTATCG 65614 || | || | | | | ||| | ||| || ||||| ||| | | | || Sbjct 21006 CGAATGCCATACTTGATCACGTTCTCCTTCAACTCCGTCCAGTCCCAAA--GACCTGACG 21063 Query 65615 TCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGAACCGAGG 65674 || | | ||| |||||| || || | | | || | || || || || || || Sbjct 21064 ACGGCGTG-ACGCCCCACATGTCGAACTGGAAGATCCCCTTGCTCGCTGGAGAGCCCTGG 21122 Query 65675 AAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTG-GTCTCGAGTGCGGCAAA 65733 || | |||||| ||| |||||||||| | || | |||| | | || | Sbjct 21123 AACGTCTCGTACGGACCCAATTCCTTGGCAATCTC-CATCGACGTCTTCATCGAAGCGTA 21181 Query 65734 ATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGCAT 65793 || || |||||||| ||| ||| || || || || | ||||| || ||| | | Sbjct 21182 GTAGATCGTCTCGAAGATGTTCTTATTCAGCTCCCGCGCTTGCTCGCTTTCAAACG-CGT 21240 Query 65794 ACC-CATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGAC 65852 | ||| || | ||| | || || ||||| || || ||||| |||| ||||| || | Sbjct 21241 AGTTCATGAGAATAAACGCATCCGCGAGACCCTGGACACCAATGCCGACTGGACGGTGGC 21300 Query 65853 GCAAATTGGAACGT-CTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGATTC 65911 ||| ||||| ||| | || || | || ||||||||||| | || || | ||| Sbjct 21301 GCATGTTGGA-CGTGCGAGCTTCTGCAACGGGGTAGTAATTCACCTCAATCACCTTGTTC 21359 Query 65912 AAATTGCGTGTCACCACATGCACGATACGTCGCAATTGTTC--GAAATCAAAATGTTTAG 65969 | || || ||||| || || | |||||| | ||| | ||| ||| Sbjct 21360 AGGTTACGCGTCACGAC--GCTGGTCACGTCGTACAGCTTCTTGTAATTAAAC------- 21410 Query 65970 GACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGA 66029 ||| ||| | ||||||||||| || || | || || | || || | Sbjct 21411 -ACG----------CCGTCTTCAACAAACTTGGGCAGCGCTACCGACGCCAAATTACACA 21459 Query 66030 CAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTA 66089 | || | || || || | || |||| | | ||| ||||| |||||| | || | Sbjct 21460 CCGCCACTTCATCCGGCGACGTGAACTCCATCACTTCACAGCACAAGTTACTGGACCGGA 21519 Query 66090 TGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACG 66149 | ||||| | ||||| || || ||||| || ||||||||| || | ||| | | Sbjct 21520 TCGTGCCAAGGTTCTGCTGGTTCGATTTGCGGTTCACTGCATCCTTATAGAGCATAAAGG 21579 Query 66150 GAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCG 66209 | || || |||| || | || | ||| || ||| || | || || | || Sbjct 21580 GCACTCCCGTTTCAATCTGCGCATCCAAGATCGCAAACCACAGCTGCTGGGCATTGATCG 21639 Query 66210 TACGTAC-CGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCC 66268 | | | | ||||| || | ||||||| | ||| || | || || || ||| Sbjct 21640 T-CTTCCTCGCCCGTCCCTCTTGTTCGTACTTTTCATACAAAGTCTCAAACTCGTCGCCC 21698 Query 66269 CA-TACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTG 66327 || |||| || |||| | |||| | | |||||| | || ||| | ||||| Sbjct 21699 CAGTACT-CGTACAGCCCTGGAGCTTCATTTGGACAGAACAAACTCCACTTACCATTTGC 21757 Query 66328 TTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCG 66387 ||| || || ||| |||||||| |||| ||| | || |||| | || || || || Sbjct 21758 TTCCACCCGTTTCATGAATAGATCGGGTACCCACAACGCAAAGAACAAGTCCCGCGCCCG 21817 Query 66388 TTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCA 66447 || ||| |||| |||||||| ||||| ||||| |||||||| | ||| || ||||| Sbjct 21818 ATGGAGTTCATTGCCATGATTTTTCCGCAAATCGAGAAACTCAAACACGTCTGCGTGCCA 21877 Query 66448 TGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCG 66507 ||||||| |||||| || ||||| || | ||||||||||||||||| || ||||| || Sbjct 21878 CGGTTCCAAGTAGATCGCAAACGATCCTTTGCGTTTGCCGCCACCTTGATCCACGTATCG 21937 Query 66508 AGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCC 66567 || | || || || || | ||| || | | |||||| || |||||| ||||| Sbjct 21938 TGCCGTGTCATTAAACACGCGAAGCATGGGGATAATCCCGTTCGAAGAGCCATTAGTGCC 21997 Query 66568 GTCGATGGGGGATCCTCGT-GCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCG 66626 ||| | | | |||| ||||| |||| ||| | | | | ||||| || || ||| Sbjct 21998 -TCGGATGTAGCTATTCGTGGCCCGGATATTGTGCATACTAATGCCAATCCCTCCTGCCC 22056 Query 66627 TCTTCGAGATGGCAGCACA 66645 ||||| ||| ||||| Sbjct 22057 ATTTCGAAATGCACGCACA 22075 >seq5172 Length=1594 Score = 102 bits (112), Expect = 6e-17 Identities = 255/387 (66%), Gaps = 3/387 (1%) Strand=Plus/Minus Query 61546 ATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATA 61605 || || ||| | || || ||||| || ||||| || ||| || ||||| |||| Sbjct 1347 ATTTTCTGGCTTAAAAAGCGTGGCCTGATGCCGGGCTTGAGTTTTTCAAATGAACTGATC 1288 Query 61606 TCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTG 61665 || ||||| || ||||||||| ||| || || ||||| | | | | | || | Sbjct 1287 TCTCGCGATGAAGGCATGCATACTGACTTCGCCTGCTTGCTGTACCAGC---AGCTTTTA 1231 Query 61666 AATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAG 61725 ||| | ||| || || || |||||||| || || ||||| | || |||||| Sbjct 1230 AATAAGCTCCCGGCTGAACGCCTGCGTGAGATTATTGCCGACGCGGTTGCAATTGAACAG 1171 Query 61726 GAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCG 61785 |||||| | || || || ||||| || || ||||| ||||| || || ||| Sbjct 1170 GAATTTGTCACCGATGCCTTGCCTGTACGCCTGATCGGTATGAACGCTGACCTGATGAAA 1111 Query 61786 CAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTAT 61845 ||||| || || |||||||| ||||| ||| | | ||||| | || ||| Sbjct 1110 CAGTACATCGAGTTTGTTGCTGACCGCCTGCTACTGACACTGGGTGAGCCCAAAATGTAT 1051 Query 61846 AATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTT 61905 | | |||| || ||||| || ||||| ||||||| | | ||||| || ||||| Sbjct 1050 CACGCTCAAAATCCCTTTGACTTTATGGAACTGATTTCATTACAAGGCAAAACCAATTTC 991 Query 61906 TTCGAGAAACGTGTAGGCGACTATCAA 61932 || || |||||||| || |||||| Sbjct 990 TTTGAAAAACGTGTCTCTGAGTATCAA 964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397523020523120