Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_023503.1 Length=48800 Score E Sequences producing significant alignments: (Bits) Value seq1616 250 8e-62 >seq1616 Length=10241 Score = 250 bits (276), Expect = 8e-62 Identities = 561/826 (68%), Gaps = 34/826 (4%) Strand=Plus/Minus Query 2095 CCAACTCCAATGATGAACATCATCAACGGTGGTTCTCACTCAGACGCTCCAATCGCTTTC 2154 || || || |||||||||||||||||||||||| | ||| | ||| | | | | | Sbjct 6229 CCTACACCTATGATGAACATCATCAACGGTGGTGCACACGCCGACAACTCGGTGGATATT 6170 Query 2155 CAAGAATTTATGATTGTACCTGCTGGTGCACCAACATTCAAAGAAGCGCTTCGTTGGGGT 2214 || ||||| ||||| | || ||||| ||||| ||| ||| ||||| ||| || Sbjct 6169 CAGGAATTCATGATCATTCCGGCTGGCTTGCCAACCTTCCGAGAGGCGCTGCGTGCCGGC 6110 Query 2215 GCTGAAATCTTCCACGCGCTTAAGAAAATCCTTAAAGAACGTGGACTTGAA-ACAGCCGT 2273 |||||| | || || ||||| || |||| |||| | | | | |||| || | || Sbjct 6109 GCTGAAGTGTTTCATGCGCTGAAAAAAA-CCTTGCATAGCAAAGGCTTGGCGACGACTGT 6051 Query 2274 AGGTGACGAAGGTGGTTTCGCACCTCGTTTCGACGGAACTGAAGATGGTGTTGAAACT-A 2332 ||||| |||||||| ||||| ||| || | |||| || | || |||| | Sbjct 6050 TGGTGATGAAGGTGGCTTCGCCCCTAACTTGCCTTCCAATGAATCTGC-GCTGCAACTGA 5992 Query 2333 TCATCAAAGCTATCGAAGCTGCTGGATATGTACCAGGTAAAGACGTATTTATC--GGACT 2390 |||| | ||||| | |||||||| || | |||||||| ||| ||||| | || || Sbjct 5991 TCATGGAGTCTATCCACGCTGCTGGTTACGAGCCAGGTAAGGAC--ATTTACCTGGGTCT 5934 Query 2391 TGACTGTGCATCATCTGAATTCTACGATGCAGAACGTAAAGTTTACGACTACACTAAATT 2450 |||||||| | ||||||||| | ||| ||||| ||| || | Sbjct 5933 GGACTGTGCCAGTACCGAATTCTACAA---AGAGGGTAAA---TACCACC---------T 5889 Query 2451 TGAAGGTGAAGGCGCTGCTGTTCGTACTG-CTGCAGAACAAATCGACTACCTTGAAGAAT 2509 ||| ||||| ||||| | | || | |||| | |||||| || | | Sbjct 5888 GGAATCCGAAGGTGCTGCATT--GACCTCACAGCAGTTCTC--CGACTATCTGGCAACGC 5833 Query 2510 TGGTTAACAAATACCCAATCATCACTATCGAAGATGGTATGGACGAAAACGACTGGGACG 2569 ||| | ||||||| || |||||||| ||||||||||| ||| |||| |||||||| | Sbjct 5832 TGGCTGACAAATATCCTATCATCACCATCGAAGATGGCATGAGCGAATTTGACTGGGAAG 5773 Query 2570 GTTGGAAATCTCTTACTGAACGTCTTGGTGGTAAAGTTC--AATTGGTTGGTGACGACTT 2627 | ||| | ||| || | ||| |||| | ||| | | ||||| ||||| ||| | Sbjct 5772 GCTGGGACATTCTGACCAAGCGT-TTGG-GCAAAACCACGCAGTTGGTCGGTGATGACCT 5715 Query 2628 CTTCGTAACTAACACTGCTTACCTTGAAAAAGGTATTGCAGAACA-CGCTGCTAACTCAA 2686 || || || ||| | ||| |||| || ||||| || || ||||| Sbjct 5714 GTTTGTGACCAACCCGAAAATCCTGCGTGAAGGCATC-CAGAAAGGCGTGGCCAACTCTG 5656 Query 2687 TCCTTATCAAAGTTAACCAAATCGGTACTTTGACTGAAACTTTTGACGCTATCGAAATGG 2746 | || |||||||| ||||| |||||||| |||||||||||||| | | || ||||||| Sbjct 5655 TGCTGATCAAAGTGAACCAGATCGGTACATTGACTGAAACTTTCCAGACCATTGAAATGG 5596 Query 2747 CGAAAGAAGCTGGATACACAGCAGTAGTATCACACCGTTCAGGTGAAACTGAAGATTCAA 2806 | || || ||||| || || || |||||||| ||||| ||||||||||| ||| Sbjct 5595 CCAAGCGTGCCAATTACACGGCTGTGGTTTCACACCGCTCAGGCGAAACTGAAGACACAA 5536 Query 2807 CAATCGCTGATATTGCAGTTGCAACTAACGCTGGTCAAATTAAGACAGGTTCATTGTCAC 2866 | ||||| |||||| ||||||| || || ||| || || || || |||||||||| | Sbjct 5535 CGATCGCGGATATTTCAGTTGCTACCAATGCTTTGCAGATCAAAACCGGTTCATTGTGCC 5476 Query 2867 GTACTGACCGTATTGCTAAATACAACCAATTGCTTCGTATCGAAGA 2912 | | || || | || || |||||||| ||||| ||||||||||| Sbjct 5475 GCTCAGAGCGCGTCGCCAAGTACAACCAGTTGCTGCGTATCGAAGA 5430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 156021199009452