Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_031120.1 Length=241147 Score E Sequences producing significant alignments: (Bits) Value seq1773 123 4e-23 >seq1773 Length=8977 Score = 123 bits (136), Expect = 4e-23 Identities = 214/303 (71%), Gaps = 10/303 (3%) Strand=Plus/Plus Query 196065 ACATGCATCAGTATCACGAACTCTTACAGCAGGTGCT-CAGTATCGGCCACGACAAAGCT 196123 ||||||| ||||| ||||| || |||| || ||||| || || ||| | | ||| | Sbjct 8120 ACATGCAACAGTACCACGACCTGCTACATCATGTGCTGCAACATGGGC-ATGTTAAAACA 8178 Query 196124 GACCGTACCGGCACAGGCACTACGTC-CTATCTCGGCGCACAGATGCGCTTCGATCTGCA 196182 |||||||||||||| ||||||| || ||| | ||| ||||||||||| || ||| Sbjct 8179 GACCGTACCGGCACGGGCACTATTTCTGTAT-TTGGCTACCAGATGCGCTTTGACCTGGC 8237 Query 196183 AGACGGATTCCCGCTGGTCACCACGAAGAAACTCCATCTGCGTTCCATCATTCATGAACT 196242 || || ||||| | ||||||| || ||| ||||||| || |||||||| ||| | Sbjct 8238 TGAAGGGTTCCCCTTACTCACCACCAAAAAAGTCCATCTCAAGTCGATCATTCACGAATT 8297 Query 196243 GCTGTGGTTCCTCAACGGGGACACCAACATCAAGTACCTGAATGACAACGGTGTCTCTAT 196302 ||| |||||| | | || ||||| || || || || || ||||| ||| || Sbjct 8298 GCTCTGGTTCTTGCAGGGCAGTACCAATATTGCATATCTCAAGGAAAACGGCGTCAGCAT 8357 Query 196303 CTGGAACGAGTGGGC-GA--ACGAACTCGGTAACCTGGGGCCGGTTTACGGTAAGCAGTG 196359 ||| | |||||||| || |||| || ||||| || || || || || | ||||| Sbjct 8358 TTGGGATGAGTGGGCAGATGCCGAA---GGCAACCTTGGTCCAGTGTATGGCTACCAGTG 8414 Query 196360 GCG 196362 ||| Sbjct 8415 GCG 8417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 771452872148760