Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020
15-10-27] 9,283 sequences; 70,257,463 total letters
Query= NC_031120.1
Length=241147
Score E
Sequences producing significant alignments: (Bits) Value
seq1773 123 4e-23
>seq1773
Length=8977
Score = 123 bits (136), Expect = 4e-23
Identities = 214/303 (71%), Gaps = 10/303 (3%)
Strand=Plus/Plus
Query 196065 ACATGCATCAGTATCACGAACTCTTACAGCAGGTGCT-CAGTATCGGCCACGACAAAGCT 196123
||||||| ||||| ||||| || |||| || ||||| || || ||| | | ||| |
Sbjct 8120 ACATGCAACAGTACCACGACCTGCTACATCATGTGCTGCAACATGGGC-ATGTTAAAACA 8178
Query 196124 GACCGTACCGGCACAGGCACTACGTC-CTATCTCGGCGCACAGATGCGCTTCGATCTGCA 196182
|||||||||||||| ||||||| || ||| | ||| ||||||||||| || |||
Sbjct 8179 GACCGTACCGGCACGGGCACTATTTCTGTAT-TTGGCTACCAGATGCGCTTTGACCTGGC 8237
Query 196183 AGACGGATTCCCGCTGGTCACCACGAAGAAACTCCATCTGCGTTCCATCATTCATGAACT 196242
|| || ||||| | ||||||| || ||| ||||||| || |||||||| ||| |
Sbjct 8238 TGAAGGGTTCCCCTTACTCACCACCAAAAAAGTCCATCTCAAGTCGATCATTCACGAATT 8297
Query 196243 GCTGTGGTTCCTCAACGGGGACACCAACATCAAGTACCTGAATGACAACGGTGTCTCTAT 196302
||| |||||| | | || ||||| || || || || || ||||| ||| ||
Sbjct 8298 GCTCTGGTTCTTGCAGGGCAGTACCAATATTGCATATCTCAAGGAAAACGGCGTCAGCAT 8357
Query 196303 CTGGAACGAGTGGGC-GA--ACGAACTCGGTAACCTGGGGCCGGTTTACGGTAAGCAGTG 196359
||| | |||||||| || |||| || ||||| || || || || || | |||||
Sbjct 8358 TTGGGATGAGTGGGCAGATGCCGAA---GGCAACCTTGGTCCAGTGTATGGCTACCAGTG 8414
Query 196360 GCG 196362
|||
Sbjct 8415 GCG 8417
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 771452872148760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |