Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_031906.1 Length=198190 Score E Sequences producing significant alignments: (Bits) Value seq3583 86.0 8e-12 seq1469 84.2 3e-11 seq3574 82.4 1e-10 >seq3583 Length=2760 Score = 86.0 bits (94), Expect = 8e-12 Identities = 70/83 (84%), Gaps = 3/83 (4%) Strand=Plus/Plus Query 19330 CGGGGAATTAGCTCAACGG--TAGAGCACCTGCTTTGCAAGCAGGGGGTTATCGGTTCGA 19387 ||||| |||||||| | |||||||||||||||||| ||||||||| |||||||||| Sbjct 1963 CGGGGGGTTAGCTCAGTTGGCTAGAGCACCTGCTTTGCACGCAGGGGGTCATCGGTTCGA 2022 Query 19388 ATCCGATATTCTCCA-TAACGGA 19409 |||||||| ||||| |||||| Sbjct 2023 CTCCGATATCCTCCACAAACGGA 2045 >seq1469 Length=11399 Score = 84.2 bits (92), Expect = 3e-11 Identities = 71/87 (82%), Gaps = 3/87 (3%) Strand=Plus/Minus Query 165734 GGAAGAGTGGCAGAGTGGTTGATTGCATCAGTCTTGAAAACTGACGTG---TTAGTAGCA 165790 ||||||||||||||| |||| | ||| ||||||||||||||| || | | | | Sbjct 171 GGAAGAGTGGCAGAGCGGTTTAATGCTACAGTCTTGAAAACTGTCGAGGGTTCACGCCCT 112 Query 165791 CCGTGAGTTCGAATCTCACCTCTTCCG 165817 ||||||||||||||||||||||||||| Sbjct 111 CCGTGAGTTCGAATCTCACCTCTTCCG 85 >seq3574 Length=2782 Score = 82.4 bits (90), Expect = 1e-10 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 19528 ATTCCTCTATAGCTCAATCGGCAGAGCATCTGACTGTTAATCAGAGGGTTCCTGGTTCGA 19587 ||||||| |||||||| |||| ||||| | ||||||||||| | ||| |||||||||| Sbjct 2474 ATTCCTCAATAGCTCAGTCGGTAGAGCGCCGGACTGTTAATCCGTAGGTCCCTGGTTCGA 2533 Query 19588 GTCCAGGTGGAGGAG 19602 | |||||| |||||| Sbjct 2534 GCCCAGGTTGAGGAG 2548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634006422942000