Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_031927.1 Length=216121 Score E Sequences producing significant alignments: (Bits) Value seq4110 98.7 1e-15 seq3583 87.8 2e-12 >seq4110 Length=2169 Score = 98.7 bits (108), Expect = 1e-15 Identities = 68/76 (89%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 142792 CGGGGAATTAGCTCAGTTGG-TAGAGCGCCTGCTTTGCAAGCAGGATGTCAACGGTTCGA 142850 ||||| |||||||||| ||| |||||||||||| ||||| |||||| ||||||||||||| Sbjct 2099 CGGGGGATTAGCTCAGCTGGCTAGAGCGCCTGCCTTGCACGCAGGAGGTCAACGGTTCGA 2040 Query 142851 GTCCGTTATTCTCCAC 142866 |||| |||||||||| Sbjct 2039 CTCCGATATTCTCCAC 2024 >seq3583 Length=2760 Score = 87.8 bits (96), Expect = 2e-12 Identities = 68/80 (85%), Gaps = 1/80 (1%) Strand=Plus/Plus Query 142792 CGGGGAATTAGCTCAGTTGG-TAGAGCGCCTGCTTTGCAAGCAGGATGTCAACGGTTCGA 142850 ||||| ||||||||||||| |||||| ||||||||||| ||||| |||| |||||||| Sbjct 1963 CGGGGGGTTAGCTCAGTTGGCTAGAGCACCTGCTTTGCACGCAGGGGGTCATCGGTTCGA 2022 Query 142851 GTCCGTTATTCTCCACCAAC 142870 |||| ||| |||||| ||| Sbjct 2023 CTCCGATATCCTCCACAAAC 2042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 691378964803080