Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= AAMG01000026.1 Length=199 Score E Sequences producing significant alignments: (Bits) Value seq3691 123 3e-26 seq8882 95.1 1e-17 seq9670 91.5 2e-16 >seq3691 Length=3329 Score = 123 bits (136), Expect = 3e-26 Identities = 147/198 (74%), Gaps = 1/198 (1%) Strand=Plus/Plus Query 1 GCAGTCTTTAGATGAATGGCTGCTTCCAGGCCAACATCCTAACTGTCTTATCAATCAGAC 60 ||| |||||| ||||||||||||||||| |||||||||||| |||||| || || || Sbjct 1954 GCACTCTTTAAATGAATGGCTGCTTCCAAGCCAACATCCTAGCTGTCTGGGCAGACAAAC 2013 Query 61 TTCGTTAGATTGACTTATCTGACATTTCTGGGGCATATCTGAGAGTCCGGATTCTTCTCC 120 ||||| | ||||| | | |||| || | || |||| ||| || ||||| || Sbjct 2014 CTCGTTCTTTCAACTTAACATATATTTGGGGACCTTAGCTGATGGTCTGGGTTCTTTCCC 2073 Query 121 TCTCGGGCACGGACCTTACCACCCATGCCCTCACTCGCGCGGCATGACTGATGCGCATTC 180 |||||| | |||||||| |||||| ||||||||| || || | | | |||||| Sbjct 2074 TCTCGGACTTGGACCTTAGCACCCAAGCCCTCACT-GCTGGGAAACATTATATAGCATTC 2132 Query 181 GGAGTTTGGCAGGACTTG 198 |||||||| ||||| ||| Sbjct 2133 GGAGTTTGTCAGGAATTG 2150 >seq8882 Length=1254 Score = 95.1 bits (104), Expect = 1e-17 Identities = 139/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 1 GCAGTCTTTAGATGAATGGCTGCTTCCAGGCCAACATCCTAACTGTCTTATCAATCAGAC 60 ||| |||||| ||| || |||||||||| || |||||||| |||||| || || ||| Sbjct 693 GCACTCTTTAAATGTATAGCTGCTTCCAAGCTAACATCCTGGCTGTCTCTGCAGTCGGAC 752 Query 61 TTCGTTAGATTGACTTATCTGACATTTCTGGGGCATATCTGAGAGTCCGGATTCTTCTCC 120 | |||| | ||||| | | |||| || | || |||| || || || ||| || Sbjct 753 CCCCTTAGTTCAACTTAGCATATATTTTGGGACCTTAGCTGATGCTCTGGGTTGTTCCCC 812 Query 121 TCTCGGGCACGGACCTTACCACCCATGCCCTCACTCGCGCGGCATGACTGATGCGC-ATT 179 |||||| | |||||||| ||||| ||||||||| || | || | |||| | ||| Sbjct 813 TCTCGGACTGGGACCTTAGCACCCCAGCCCTCACTGCCGTGT-ATATC--ATGCCCCATT 869 Query 180 CGGAGTTTGGCAG 192 ||||||||| ||| Sbjct 870 CGGAGTTTGTCAG 882 >seq9670 Length=1159 Score = 91.5 bits (100), Expect = 2e-16 Identities = 140/196 (71%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 1 GCAGTCTTTAGATGAATGGCTGCTTCCAGGCCAACATCCTAACTGTCTTATCAATCAGAC 60 ||| |||||| |||||| |||||||||| || |||||||| |||| || | || || Sbjct 925 GCACTCTTTAAATGAATTGCTGCTTCCAAGCAAACATCCTGGCTGTTATAGAAGTCCTAC 866 Query 61 TTCGTTAGATTGACTTATCTGACATTTCTGGGGCA---TATCTGAGAGTCCGGATTCTTC 117 ||||| ||| ||||| | ||| | | || | || ||| | || || || || Sbjct 865 CTCGTTTGATCAACTTAAC---CATGTATTAGGGACCTTAGCTGCTATTCTGGGTTATTT 809 Query 118 TCCTCTCGGGCACGGACCTTACCACCCATGCCCTCACTCGCGCGGCATGACTGATGCGCA 177 |||||||| |||||| |||| ||||| |||||||| || | || ||| | ||| Sbjct 808 CCCTCTCGGCCACGGATCTTAGCACCCGCAGCCTCACTCCCG-GTAATATCTGTTA-GCA 751 Query 178 TTCGGAGTTTGGCAGG 193 ||||||||||| |||| Sbjct 750 TTCGGAGTTTGTCAGG 735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 537537056112