Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq3567 264 5e-68 seq1297 233 8e-59 seq2766 232 3e-58 seq4520 176 2e-41 seq2130 176 2e-41 seq9 163 1e-37 seq8368 159 1e-36 seq204 132 2e-28 >seq3567 Length=8923 Score = 264 bits (292), Expect = 5e-68 Identities = 236/297 (79%), Gaps = 23/297 (8%) Strand=Plus/Plus Query 408 CCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACC 467 ||||||||| |||||||||||||||||||||||| ||||||||| |||||||| ||||| Sbjct 2164 CCCGTCTTGAAACACGGACCAAGGAGTCTAACATATATGCGAGTATTTGGGTGAAAAACC 2223 Query 468 CGTGCGCGTAATGAAAGTGAACGG-------------AGGTGGGAACC-------CGTG- 506 | ||||||||||||| | || |||| |||| | || | Sbjct 2224 CTGATGCGTAATGAAAGTAATGGGCTGATAAAGCCCGAGGTAGGAATCTTGTCTTCGGGC 2283 Query 507 AGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGT 566 | | |||| ||||||||||| | | ||| || |||||||||||||||||| |||| Sbjct 2284 AAGAGGCACTATCGACCGATCGT--TCGCTTGCGAAAGATTTGAGTAAGAGCATATCTGT 2341 Query 567 TGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTG 626 |||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||| Sbjct 2342 TGGGACCCGAAAGATGGTGATCTATGCCTGAACAGGGTGAAGCCAGGGGAAACTCTGGTG 2401 Query 627 GAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || ||||| |||| | ||| ||||||||||| ||||| |||||||||||||||||| Sbjct 2402 GAAGCTCGTAGCGATACTGACGTGCAAATCGTTCGTCTGATTTGGGTATAGGGGCGA 2458 Score = 176 bits (194), Expect = 2e-41 Identities = 145/177 (82%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 34 TTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAG 93 ||| | |||||| |||| |||||| |||||| ||||| ||| |||||| ||| || |||| Sbjct 1678 TTCTAAGAGTCGCGTTGCTTGGGAGTGCAGCGCTAAACGGGTGGTAAAGTTCATCCAAAG 1737 Query 94 CTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACT 153 ||||||| || | ||| |||||||||| ||||||| |||| ||||||||||||| ||| Sbjct 1738 CTAAATACTGACGAGAAACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACT 1797 Query 154 TTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAG 210 ||| |||||||||||||||| || |||||||||| | ||| ||| | ||||||| Sbjct 1798 TTGAAAAGAGAGTTAAAAAGTACTTGAAATTGTTAACAGGTAAGGGGAGTCAACCAG 1854 >seq1297 Length=21369 Score = 233 bits (258), Expect = 8e-59 Identities = 237/313 (76%), Gaps = 38/313 (12%) Strand=Plus/Plus Query 408 CCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-AAAC 466 ||||||||| |||||||||||||||||||||||| | ||| |||||| |||||| |||| Sbjct 2285 CCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTGTGCAAGTGTTAGGGTGTGGAAAC 2344 Query 467 CCGTGCGCGTAATGAAAGTGAACG----------------GAGGTGGGAACCCGTGAGGG 510 || ||||| ||||||||| || | ||||| |||| || || Sbjct 2345 CCAAGCGCGAAATGAAAGTAAAGGATAGTGTAAACTGTCTGAGGTAGGAAATGCTGCGGA 2404 Query 511 T----------------GCACCATCGACCGATCCTGATGTCTTCG----GATGGATTTGA 550 | |||| ||||||||||| ||| ||||| || ||||||| Sbjct 2405 TTTCGGTCTGTGGCGTGGCACTATCGACCGATCATGAAC-CTTCGTGGTGAAAGATTTGA 2463 Query 551 GTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCC 610 || ||||| | |||||| ||||||||||||||||||||||||||| |||||||||||| Sbjct 2464 GTTTGAGCACATATGTTGGTACCCGAAAGATGGTGAACTATGCCTGAGTAGGGTGAAGCC 2523 Query 611 AGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTG 670 || ||||||||||||||| ||||| |||| ||||| ||||||||||||||||| || ||| Sbjct 2524 AGGGGAAACTCTGGTGGAAGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCGAACTTG 2583 Query 671 GGTATAGGGGCGA 683 ||||||||||||| Sbjct 2584 GGTATAGGGGCGA 2596 Score = 176 bits (194), Expect = 2e-41 Identities = 135/160 (84%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||| ||||||||| | || | || |||||||| | ||||||||||||| Sbjct 1738 GAGTCGCGTTGTTTGAGAATGCAGCGCAAAGTAGGTGGTAAATTCCATCTAAAGCTAAAT 1797 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 ||||| ||||||||||||| ||||||| |||| ||||||||||||| |||||| || Sbjct 1798 ATTGGTGCGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGAAA 1857 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 ||||||||||| || || ||||| || |||||||||| || Sbjct 1858 AGAGAGTTAAAGAGTACCTGAAACTGCTGAAAGGGAACCG 1897 >seq2766 Length=8717 Score = 232 bits (256), Expect = 3e-58 Identities = 222/281 (79%), Gaps = 5/281 (2%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-A 463 || ||||||||| ||||||||||||||||||| |||| | ||||||| ||||| | Sbjct 3667 CGACCCGTCTTGAAACACGGACCAAGGAGTCTGACATGTGTGCGAGTCAACGGGTGAGTA 3608 Query 464 AACCCGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGAC 522 ||||||| | || || ||| ||| || || || ||| | ||||||||| |||| Sbjct 3607 AACCCGTAAGGCGCAAGGAAGCTGATTGGCGG---GATCCCTCGCGGGTGCACCGCCGAC 3551 Query 523 CGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATG 582 ||| | |||| | | || || || |||| |||||| |||| ||||||||||||||| Sbjct 3550 CGACCTTGATCTTCTGAGAAGGGTTCGAGTGTGAGCATGCCTGTCGGGACCCGAAAGATG 3491 Query 583 GTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTT 642 ||||||||||||||| |||| ||||||||||||||||||||||| || ||||||| | Sbjct 3490 GTGAACTATGCCTGAGCGGGGTAAAGCCAGAGGAAACTCTGGTGGAAGCCCGCAGCGATA 3431 Query 643 CTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||| ||||||||||| ||||| | |||||||||||||||| Sbjct 3430 CTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGA 3390 Score = 158 bits (174), Expect = 5e-36 Identities = 134/165 (81%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 94 || |||||||| |||||||||||||||||| | || ||| |||||||| | || || || Sbjct 4053 TCTACGAGTCGGGTTGTTTGGGAATGCAGCCCCAATCGGGCGGTAAATTCCGTCCAAGGC 3994 Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTT 154 |||||| ||| |||||||||||||| ||||||| | || |||||||||||| |||| Sbjct 3993 TAAATACGGGCGAGAGACCGATAGCGAACAAGTACCGCGAGGTAAAGATGAAAAGGACTT 3934 Query 155 TGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 || ||||||||| ||| || | ||||||||| | ||||||||| Sbjct 3933 TGAAAAGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGAAGCG 3889 >seq4520 Length=2528 Score = 176 bits (194), Expect = 2e-41 Identities = 135/160 (84%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||| ||||||||| | || | || |||||||| | ||||||||||||| Sbjct 2401 GAGTCGCGTTGTTTGAGAATGCAGCGCAAAGTAGGTGGTAAATTCCATCTAAAGCTAAAT 2342 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 ||||| ||||||||||||| ||||||| |||| ||||||||||||| |||||| || Sbjct 2341 ATTGGTGCGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGAAA 2282 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 ||||||||||| || || ||||| || |||||||||| || Sbjct 2281 AGAGAGTTAAAGAGTACCTGAAACTGCTGAAAGGGAACCG 2242 Score = 165 bits (182), Expect = 3e-38 Identities = 143/176 (81%), Gaps = 5/176 (3%) Strand=Plus/Minus Query 512 GCACCATCGACCGATCCTGATGTCTTCG----GATGGATTTGAGTAAGAGCATAGCTGTT 567 |||| ||||||||||| ||| ||||| || ||||||||| ||||| | |||| Sbjct 1720 GCACTATCGACCGATCATGAAC-CTTCGTGGTGAAAGATTTGAGTTTGAGCACATATGTT 1662 Query 568 GGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGG 627 || ||||||||||||||||||||||||||| |||||||||||||| || ||||||||| | Sbjct 1661 GGTACCCGAAAGATGGTGAACTATGCCTGAGTAGGGTGAAGCCAGGGGGAACTCTGGTAG 1602 Query 628 AGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | ||||| || | ||||| ||| |||||| ||||| || ||| ||||||||||| Sbjct 1601 AAGCTCGTAGTGATTCTGACGTACAAATCTATCGTTGAACTTGTATATAGGGGCGA 1546 >seq2130 Length=7238 Score = 176 bits (194), Expect = 2e-41 Identities = 123/140 (88%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 544 GATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGG 603 ||||||||| ||||| | |||||| ||||||||||||||||||||||||||| ||||| Sbjct 5676 GATTTGAGTGTGAGCACATATGTTGGTACCCGAAAGATGGTGAACTATGCCTGAGTAGGG 5735 Query 604 TGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTC 663 ||||||||| ||||||||||||||| ||||| || | ||||| ||||||||| ||||||| Sbjct 5736 TGAAGCCAGGGGAAACTCTGGTGGAAGCTCGTAGAGATTCTGACGTGCAAATTGATCGTC 5795 Query 664 AAATTTGGGTATAGGGGCGA 683 || || ||||||||||||| Sbjct 5796 GAACTTTGGTATAGGGGCGA 5815 >seq9 Length=96720 Score = 163 bits (180), Expect = 1e-37 Identities = 102/110 (93%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 574 CGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTC 633 |||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||| Sbjct 2095 CGAAAGATGGTGAACTATGCCTGAGTAGGGTGAAGCCAGGGGAAACTCTGGTGGAAGCTC 2036 Query 634 GCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | |||| ||||| ||||||||||||||||| || |||||||||||||||| Sbjct 2035 GTAGCGATTCTGACGTGCAAATCGATCGTCGAACTTGGGTATAGGGGCGA 1986 >seq8368 Length=1322 Score = 159 bits (176), Expect = 1e-36 Identities = 138/169 (82%), Gaps = 8/169 (5%) Strand=Plus/Plus Query 34 TTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAG 93 ||| | |||||| ||||||||||| |||||| ||||||||||| |||| ||||||||| | Sbjct 1011 TTCTAAGAGTCGGGTTGTTTGGGATTGCAGCCCTAAATGGGAGATAAACTTCTTCTAAGG 1070 Query 94 CTAAATAT---TGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGC 150 |||||||| ||| || |||||||||| ||||||| |||| ||||| ||||||| Sbjct 1071 CTAAATATCTATGG---GAAACCGATAGCGAACAAGTACTGTGAAGGAAAGGTGAAAAGA 1127 Query 151 ACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||| |||||| ||||||| || |||||| ||||| | ||||||| Sbjct 1128 ACTTTGAAAAGAGGGTTAAAA--GACTTGAAATCGTTGAGAAGGAAGCG 1174 >seq204 Length=43828 Score = 132 bits (146), Expect = 2e-28 Identities = 96/110 (87%), Gaps = 2/110 (2%) Strand=Plus/Minus Query 544 GATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGG 603 ||||||||| ||||| | |||||| ||||||||||||||||||||||||||| ||||| Sbjct 23346 GATTTGAGTTTGAGCACATATGTTGGTACCCGAAAGATGGTGAACTATGCCTGAGTAGGG 23287 Query 604 TGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAA 653 ||||||||| ||||| |||||||| ||||| |||| ||||| ||||||| Sbjct 23286 TGAAGCCAGGGGAAA--CTGGTGGAAGCTCGTAGCGATTCTGACGTGCAA 23239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079740755300