Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= AAMG01000370.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq3910 176 4e-42 seq3691 163 3e-38 seq7202 75.2 1e-11 >seq3910 Length=3064 Score = 176 bits (194), Expect = 4e-42 Identities = 143/173 (83%), Gaps = 3/173 (2%) Strand=Plus/Plus Query 8 GGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67 || ||||||||||||| || ||||||| |||||||||| |||||||||||||||| ||| Sbjct 2701 GGCGGATGCCTAGGCTTTCAGAGGCGACGAAGGACGTGGTAAGCTGCGAAAAGCTCGGGG 2760 Query 68 GATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCCGATATATTGGAGA 127 |||||||||| |||||||||||| |||| |||||||||||||||||| || ||| ||| Sbjct 2761 GATTGGCACACACGAATTGATCCCGAGATGTCCGAATGGGGCAACCCGGCATGTTGAAGA 2820 Query 128 TATATCATAACGCTAGGCGTTAGGCGAACGTGGGGAACTGAAACATCTAAGTA 180 || ||| ||| ||| | || ||| || ||||||||||||||||||| Sbjct 2821 CATGTCACTCCGCAAGGAG---AGCAAACCCGGAGAACTGAAACATCTAAGTA 2870 >seq3691 Length=3329 Score = 163 bits (180), Expect = 3e-38 Identities = 141/175 (81%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 6 ACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACG 65 |||| |||||||||||||||| ||||||| ||||||||||||||||||||| |||||||| Sbjct 3055 ACGGAGGATGCCTAGGCTCTCAGAGGCGATGAAGGACGTGATAAGCTGCGATAAGCTACG 2996 Query 66 GGGATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCCGATATATTGGA 125 |||| |||||| |||||||||||| ||||||||||||||||| ||| ||| | Sbjct 2995 GGGAGGAGCACATTTTCTGTGATCCGTAGATTTCCGAATGGGGCAACCCAATAGTTTGAA 2936 Query 126 GATATATCATAACGCTAGGCGTTAGGCGAACGTGGGGAACTGAAACATCTAAGTA 180 || ||| | | || | || | || ||| || ||||||||||||||||||| Sbjct 2935 GAACTATTACTATGCCAAGCATAGAGCTAACTCGGTGAACTGAAACATCTAAGTA 2881 >seq7202 Length=1522 Score = 75.2 bits (82), Expect = 1e-11 Identities = 88/115 (77%), Gaps = 3/115 (3%) Strand=Plus/Plus Query 2 GCAGACGGTGGATGCCTAGGC-TCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAG 60 ||| ||||||||||||| ||| ||| |||| ||||||||||||| || |||||| ||| Sbjct 435 GCAAACGGTGGATGCCTTGGCATCT-GGAGCCGAAGAAGGACGTAGCAATCTGCGATAAG 493 Query 61 CTACGGGG-ATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC 114 | ||||| | || | | | |||||||| | | ||||||||||| ||||| Sbjct 494 CCTCGGGGAACTGATAAGCAAGTTTTGATCCGAGGGTGTCCGAATGGGGAAACCC 548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476744174766