Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq1837 172 8e-41 seq3691 129 8e-28 seq8882 114 2e-23 seq520 105 9e-21 seq3312 86.0 9e-15 seq1800 77.0 5e-12 >seq1837 Length=8728 Score = 172 bits (190), Expect = 8e-41 Identities = 193/254 (76%), Gaps = 7/254 (3%) Strand=Plus/Plus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| |||||| ||| ||||||||||||| | ||||||||| ||| | | ||| ||| Sbjct 3890 CTTAACCTTCCGGCACTGGGCAGGCGTCAGCGCCTATACATCGCCTTGCGG-CTTAGCAG 3948 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTC- 119 |||||||||||| ||||||||||||| || | | ||||||||||| | |||| Sbjct 3949 ACACCTGTGTTTTTGTTAAACAGTCGCTTGGGCCTCTCCGCTGCGACCACCTCATGCTCC 4008 Query 120 ---AACACGTCG-TTCAC-CAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTT 174 | || ||| ||||| | | ||||||| |||||| || ||| ||| | | |||||| Sbjct 4009 GAGAGCAAGTCTCTTCACACTACCGTGGCACTCCTTCTTCCAAAGGTACAGAGTCATTTT 4068 Query 175 GCCGAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGT 234 ||||| ||||||| | | ||| | || || |||||||||||||||| | | |||||| Sbjct 4069 GCCGAGTTCCTTAGCGAGGGTTTTCTCGCGCGTCTTAGTATTCTCTACCAGCCTACCTGT 4128 Query 235 GTCGGTTTACGGTA 248 |||||||| ||||| Sbjct 4129 GTCGGTTTCCGGTA 4142 >seq3691 Length=3329 Score = 129 bits (142), Expect = 8e-28 Identities = 176/248 (71%), Gaps = 21/248 (8%) Strand=Plus/Plus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| ||||||| ||||||||||| ||||| || ||||| || ||||| | || ||| Sbjct 1216 CTTAACCTTCCAGCACCGGGCAGGTGTCAGGCCCTATACTTCATCTTACGATTTT-GCAG 1274 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 | ||||||||||| ||||||||||| | || ||| ||||| || ||| ||| Sbjct 1275 AGCCCTGTGTTTTTGATAAACAGTCGCCTGGACCTCTTCACTGCGGCCCCCATT-GCTG- 1332 Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180 | ||| || ||||||||||||||| || | |||||||| || Sbjct 1333 ------------------GGGGCGACCTTTCTCCCGAAGTTACAGGTCTATTTTGCCTAA 1374 Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240 ||||||| ||| || | ||| | |||||| ||||||| | || |||||||||||| Sbjct 1375 TTCCTTAGCCATGAATCTCTCGAGCACCTTAGGATTCTCTCCTCAACTACCTGTGTCGGT 1434 Query 241 TTACGGTA 248 |||||||| Sbjct 1435 TTACGGTA 1442 >seq8882 Length=1254 Score = 114 bits (126), Expect = 2e-23 Identities = 174/248 (70%), Gaps = 20/248 (8%) Strand=Plus/Plus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| ||||||| ||||||||||| |||| | ||||| || ||| | | || ||| Sbjct 11 CTTAACCTTCCAGCACCGGGCAGGTATCAGGCTCTATACGTCATCTTTCGATTTT-GCAA 69 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 | | ||||||||| ||||||||||| | | ||||||||| || | Sbjct 70 AGCCATGTGTTTTTGCTAAACAGTCGCCTGGGCCATTTCTCTGCGGCCTC---------- 119 Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180 || | | || || || ||||||||||||||||||| ||| | |||||||| Sbjct 120 -----TCTTGCG--AGGAG--GCTCCCCTTCTCCCGAAGTTACAGGGTTAATTTGCCGAG 170 Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240 ||||||| || ||||| ||| | |||||| || ||| | ||| |||||||||||| Sbjct 171 TTCCTTAGCCGTGATTCACTCGAGCACCTTAGAATATTCTTCTCGACTACCTGTGTCGGT 230 Query 241 TTACGGTA 248 |||||||| Sbjct 231 TTACGGTA 238 >seq520 Length=38604 Score = 105 bits (116), Expect = 9e-21 Identities = 169/242 (70%), Gaps = 18/242 (7%) Strand=Plus/Plus Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66 |||||| |||||||||| |||||| || |||||||| ||||| | || ||| | ||| Sbjct 12922 CTTCCAGCACCGGGCAGACGTCAGACCCTATACATCATGTTACCAT-TTAGCAGAGCCCT 12980 Query 67 GTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGT 126 ||||||| ||||||||||| ||| ||||| | || || | ||| | Sbjct 12981 AAGTTTTTATTAAACAGTCGCAACCCCCTATTTTGTGACAC----------TTAAC---T 13027 Query 127 CGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTT 186 || | ||| || || |||||||||||| | ||||||||||| |||||| Sbjct 13028 TTTTAAATT----TGGTACTTTTTATCCCGAAGTTACAAAGTCATTTTGCCGAGTTCCTT 13083 Query 187 AACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGG 246 | | ||||| | | | ||||||| | ||| |||| ||||||||||||||||| || Sbjct 13084 CAATATAGTTCTCTCATTCACCTTAGTCTACTCGACCTATCCACCTGTGTCGGTTTAGGG 13143 Query 247 TA 248 || Sbjct 13144 TA 13145 >seq3312 Length=3868 Score = 86.0 bits (94), Expect = 9e-15 Identities = 169/245 (69%), Gaps = 20/245 (8%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 ||||| ||| ||||||| ||||| || ||||| || ||||| || || ||| |||| Sbjct 1447 CCTTCTGGCACTGGGCAGGAGTCAGCCCCTATACTTCACCTTACGGTTTT-GCAGAGACC 1505 Query 66 TGTGTTTTTAGTAAACAGTCG-CTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACAC 124 ||||||||| ||||||||||| || |||| || ||||| | || || | Sbjct 1506 TGTGTTTTTGGTAAACAGTCGCCTGGGCTCT-TTAGCTGCGCC---------CTATACCC 1555 Query 125 GTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACG-GGGCCATTTTGCCGAATTC 183 ||| | | | |||| ||||| ||||||||||| || ||||||||| ||| Sbjct 1556 TTCGAT-ATAGGGAGTG------CTTCTTCCGAAGTTACGCACGCTTTTTTGCCGAGTTC 1608 Query 184 CTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTA 243 ||||| | ||| | || | |||||||| ||| ||| ||||| | || || ||| Sbjct 1609 CTTAAAGAGGGTTTTCTCGTTCATCTTAGTATACTCAACCAATCCACCAGCGTTGGATTA 1668 Query 244 CGGTA 248 ||||| Sbjct 1669 CGGTA 1673 >seq1800 Length=13846 Score = 77.0 bits (84), Expect = 5e-12 Identities = 73/92 (79%), Gaps = 1/92 (1%) Strand=Plus/Minus Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66 |||||| ||||||||||| ||||| || |||||||| ||||| | || ||| | ||| Sbjct 10074 CTTCCAGCACCGGGCAGGTGTCAGACCCTATACATCATGTTACCAT-TTAGCAGAGTCCT 10016 Query 67 GTGTTTTTAGTAAACAGTCGCTTCCCTCTATT 98 ||||||| ||||||||||| ||| ||||| Sbjct 10015 AAGTTTTTATTAAACAGTCGCAACCCCCTATT 9984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694318697478