Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq2766 316 3e-84 seq1297 313 4e-83 seq3567 304 2e-80 seq7504 217 2e-54 seq9199 199 6e-49 seq181 87.8 3e-15 >seq2766 Length=8717 Score = 316 bits (350), Expect = 3e-84 Identities = 231/264 (88%), Gaps = 7/264 (3%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5245 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 5304 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGA--AGCCAATAGTCCCTCTAAGAAG-CCA 118 |||||||||||||||||||||| | || | || | |||| ||||||||||||||| ||| Sbjct 5305 CCTGTTATTGCCTCAAACTTCCTTGGGTTTGATTACCCAAAAGTCCCTCTAAGAAGTCCA 5364 Query 119 ---GCC-ACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCG 174 ||| ||||| || || | || ||| |||||||| | ||||||||||||||| || Sbjct 5365 CACGCCTACCAAAAATGGTAAACGGAACTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACG 5424 Query 175 GAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAA 234 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 5425 GAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAA 5484 Query 235 TCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||| ||| |||||| Sbjct 5485 TCAAGAAAGAGCTCTCAGTCTGTC 5508 >seq1297 Length=21369 Score = 313 bits (346), Expect = 4e-83 Identities = 222/250 (89%), Gaps = 7/250 (3%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 337 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 278 Query 76 AAACTTCCATTGGCTGGA--AGCCAATAGTCCCTCTAAGAAG-CCA---GCC-ACCAACC 128 ||||||| |||| | || | |||| ||||||||||||||| ||| ||| ||||| Sbjct 277 CAACTTCCTTTGGTTTGATTACCCAAAAGTCCCTCTAAGAAGTCCACACGCCTACCAAAA 218 Query 129 ATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACA 188 || || | || ||| |||||| | ||||||||||||||| |||||||||||||||| Sbjct 217 ATGGTAAACGGAACTAGTTAGCACGCGGAGGTCTCGTTCGTTAACGGAATTAACCAGACA 158 Query 189 AATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTA 248 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 157 AATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTC 98 Query 249 TCAATCTGTC 258 |||||||||| Sbjct 97 TCAATCTGTC 88 >seq3567 Length=8923 Score = 304 bits (336), Expect = 2e-80 Identities = 218/248 (88%), Gaps = 6/248 (2%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 334 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 275 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCA----GCC-ACCAACCAT 130 ||||||| |||||| |||| ||||||||||||||| || ||| ||||| || Sbjct 274 GAACTTCCTTTGGCTACTCACCAAAAGTCCCTCTAAGAAGTCAACACGCCTACCAAAAAT 215 Query 131 AGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAA 190 || | || ||| |||||| | ||||||||||||||| |||||||||||||||||| Sbjct 214 GGTAAACGGAACTAGTTAGCACGCGGAGGTCTCGTTCGTTAACGGAATTAACCAGACAAA 155 Query 191 TCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATC 250 |||||||||||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 154 TCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGATCT-TC 96 Query 251 AATCTGTC 258 |||||||| Sbjct 95 AATCTGTC 88 >seq7504 Length=1463 Score = 217 bits (240), Expect = 2e-54 Identities = 199/246 (81%), Gaps = 4/246 (2%) Strand=Plus/Minus Query 14 CGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCC 73 || ||||||||||||||||| |||| | ||||||||||||||||||||||||||||||| Sbjct 330 CGCCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC- 272 Query 74 TCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCAC-CAACCATAG 132 |||| || | |||| | || | | |||||||||||||| | | || ||| Sbjct 271 TCAATCT-CGTGCGGCTAAACACCGAAAATCCCTCTAAGAAGCAACTGAGACATTGATAA 213 Query 133 TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATC 192 || | |||||||| ||| || |||||| ||||||||||||| ||||||||||||| Sbjct 212 TCTC-GTTACTATTTAGTAGGCTAGAGTCTCGCTCGTTATCGGAATAAACCAGACAAATC 154 Query 193 ACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAA 252 ||||| ||||||||||||||||||||||||| ||| |||||| |||||||||||||| Sbjct 153 GATCCACGAACTAAGAACGGCCATGCACCACCAACCACCGAATCATGAAAGAGCTATCAA 94 Query 253 TCTGTC 258 |||||| Sbjct 93 TCTGTC 88 >seq9199 Length=1215 Score = 199 bits (220), Expect = 6e-49 Identities = 193/244 (79%), Gaps = 7/244 (3%) Strand=Plus/Plus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 ||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||| Sbjct 320 CAGTGTAGCACGCGTGCAGCCCCGAACATCTAAGGGCATCACAGACCTGTTATTGCGC-- 377 Query 77 AACTTCCATT-GGCTGGAAGCCAATAGTCCCTCTAAGAAGC-CAGCCACCAACCATAGTC 134 |||| | | |||| || || | | |||||||||| | | | ||| || || Sbjct 378 -ACTTTCGTGCGGCTCGATACCGCCAATTCCTCTAAGAACTTCTGAGAACAAAATTATTC 436 Query 135 GATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCAC 194 | | |||| || ||| | |||||| ||||||||||||| ||||||||||||| | Sbjct 437 --TCGAAGTATTGAGTAGGCTTGCGTCTCGCTCGTTATCGGAATAAACCAGACAAATCGC 494 Query 195 TCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATC 254 ||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||| || Sbjct 495 TCCACCAACTAAGAACGGCCATGCACCACCAACCACCGAATCAAGAAAGAGCTCTCAGTC 554 Query 255 TGTC 258 |||| Sbjct 555 TGTC 558 >seq181 Length=46220 Score = 87.8 bits (96), Expect = 3e-15 Identities = 51/53 (96%), Gaps = 0/53 (0%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTA 68 ||||||||||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct 6021 TCAGTGTAGCGCGCGTGCGGCTCAGAATATCTAAGGGCATCACAGACCTGTTA 5969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796706708166