Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq2766 408 7e-112 seq5921 365 8e-99 seq3567 347 2e-93 seq1105 327 2e-87 seq8739 248 1e-63 seq539 183 5e-44 seq9 131 3e-28 seq5830 113 8e-23 seq6491 111 3e-22 seq11625 107 3e-21 seq8435 107 3e-21 seq5499 107 3e-21 seq3563 107 3e-21 seq2551 107 3e-21 seq10892 102 1e-19 seq799 89.7 9e-16 seq3691 78.8 2e-12 seq1837 73.4 7e-11 >seq2766 Length=8717 Score = 408 bits (452), Expect = 7e-112 Identities = 267/293 (91%), Gaps = 1/293 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| || | | || ||| ||||||||||||||||||||||||||||| Sbjct 1288 TACTAGGTTGAATTACTATCGCGACG-CGGGCATCAGTAGGGTAAAACTAACCTGTCTCA 1346 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 ||||||||||||||||||||||||||||||| |||||||||||||||||| ||| || Sbjct 1347 CGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGA 1406 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1407 ATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 1466 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | Sbjct 1467 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTT 1526 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 |||||| ||| || |||||||||||||||||||| |||||| |||| |||||| Sbjct 1527 CAAATTCCGAAGGTCTAAAGGATCGATAGGCCACGCTTTCACGGTTCGTATTC 1579 >seq5921 Length=1845 Score = 365 bits (404), Expect = 8e-99 Identities = 258/294 (88%), Gaps = 1/294 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||||||| | ||||| || | | || |||| ||||||||||||||||||||||||| Sbjct 1038 TACTAAGCAGGATTACTATCGCAACAACTAGTCAACAGTAGGGTAAAACTAACCTGTCTC 1097 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | ||||||||||||||||||||||||||||||| |||||||||||||||||||||| || Sbjct 1098 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACGCTTGGCG 1157 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1158 AATTCTGCTTCGCAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 1217 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 || ||||||||||||||||||||||||||||||||||||||||||||| ||||||| || Sbjct 1218 TGGACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTTGCA 1277 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 ||| || | |||||||||||||||||| ||||| ||| ||||||| Sbjct 1278 AGAAACTTTCTTATTCAAAAGGATCGATAGGCCACGCTTTCGCGGTCTGTATTC 1331 >seq3567 Length=8923 Score = 347 bits (384), Expect = 2e-93 Identities = 235/263 (89%), Gaps = 3/263 (1%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 4548 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTG 4489 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 || |||| |||||||||| || ||| | |||||| || ||||||||||||||||| Sbjct 4488 TTGGTGGATGAACAATCCGACACTTGGCC---TCTGCTGCGCAATGATAGGAAGAGCCGA 4432 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4431 CATCGAAGAATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 4372 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270 ||||||||||||||||| |||||||||| | ||| || | |||||||||||||||||| Sbjct 4371 CTGTGGTAACTTTTCTGACACCTCTAGCTTAAAAGTTTTAAAGACTAAAGGATCGATAGG 4312 Query 271 CCACACTTTCATGGTTTGTATTC 293 ||| |||||| |||||||||| Sbjct 4311 CCATGCTTTCACAGTTTGTATTC 4289 >seq1105 Length=18417 Score = 327 bits (362), Expect = 2e-87 Identities = 202/216 (94%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 18196 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 18255 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||||||||||||| || ||| |||| ||||| ||||||||||||||||| Sbjct 18256 TTAGTGGGTGAACAATCCAACAATTGGCGAGTTCTACTTCGCAATGATAGGAAGAGCCGA 18315 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 18316 CATCGAAGAATCAAAAAGCAACGTCGCTATGGACGCTTGGCTGCCACAAGCCAGTTATCC 18375 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATT 246 ||||||||||||||||| |||||||||| | ||||| Sbjct 18376 CTGTGGTAACTTTTCTGACACCTCTAGCTTAAAATT 18411 >seq8739 Length=1270 Score = 248 bits (274), Expect = 1e-63 Identities = 161/177 (91%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 118 CGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGC 177 ||| |||| ||||| ||||||||||||||||||||||||| |||||||||||||||||| Sbjct 53 CGAGTTCTACTTCGCAATGATAGGAAGAGCCGACATCGAAGAATCAAAAAGCAACGTCGC 112 Query 178 TATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAG 237 |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 113 TATGGACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAG 172 Query 238 CCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 | | ||||| | | ||||||||||||||||||||| |||||| |||||||||||| Sbjct 173 CTTAAAATTCTAAAGAACTAAAGGATCGATAGGCCACGCTTTCACGGTTTGTATTCA 229 >seq539 Length=27333 Score = 183 bits (202), Expect = 5e-44 Identities = 144/171 (84%), Gaps = 1/171 (1%) Strand=Plus/Minus Query 124 CTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAA 183 || ||||| ||||| ||||||||||||||||| |||||||| ||||||||| || | Sbjct 20473 CTACTTCGCACTGATAAGAAGAGCCGACATCGAACACTCAAAAAGAAACGTCGCTTTGGA 20414 Query 184 CGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAA 243 |||||||||| ||||||||||||||||||||||||||||| || |||||||||| | || Sbjct 20413 AGCTTGGCTGCGACAAGCCAGTTATCCCTGTGGTAACTTTT-TGACACCTCTAGCTTTAA 20355 Query 244 ATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 | | ||| | || ||||||||| ||| |||| |||||| |||||||| ||| Sbjct 20354 ACTCCGAAGAACCAAAGGATCGGTAGACCACGCTTTCACGGTTTGTAATCA 20304 >seq9 Length=96720 Score = 131 bits (144), Expect = 3e-28 Identities = 87/97 (90%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 198 AAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTA 257 |||||||||||||||||||||||||||||| |||||||||| | ||||| | | |||| Sbjct 1 AAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTTAAAATTCTAAAGAACTA 60 Query 258 AAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 ||||||||||||||||| |||||| |||||||||||| Sbjct 61 AAGGATCGATAGGCCACGCTTTCACGGTTTGTATTCA 97 >seq5830 Length=1870 Score = 113 bits (124), Expect = 8e-23 Identities = 68/72 (94%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||| ||||||||||||||||||||||| || ||||||||||||||||| |||||||| Sbjct 1288 TCATCAATAGGGTAAAACTAACCTGTCTCACGATGGTCTAAACCCAGCTCAGGTTCCCTA 1229 Query 91 TTAGTGGGTGAA 102 |||||||||||| Sbjct 1228 TTAGTGGGTGAA 1217 >seq6491 Length=4799 Score = 111 bits (122), Expect = 3e-22 Identities = 70/76 (92%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||| ||||||||||||||||||| ||| || ||||||||||||||||| |||||||| Sbjct 351 TCATCAATAGGGTAAAACTAACCTGTATCACGATGGTCTAAACCCAGCTCAGGTTCCCTA 410 Query 91 TTAGTGGGTGAACAAT 106 ||||||||||||| || Sbjct 411 TTAGTGGGTGAACTAT 426 >seq11625 Length=1379 Score = 107 bits (118), Expect = 3e-21 Identities = 67/72 (93%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||| ||||||||||||||||||||||| || ||||||||||||||||| |||||||| Sbjct 798 TCATCAATAGGGTAAAACTAACCTGTCTCACGATGGTCTAAACCCAGCTCAGGTTCCCTA 739 Query 91 TTAGTGGGTGAA 102 ||||||||| || Sbjct 738 TTAGTGGGTAAA 727 >seq8435 Length=1312 Score = 107 bits (118), Expect = 3e-21 Identities = 89/108 (82%), Gaps = 2/108 (2%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG--TCATCAGTAGGGTAAAACTAACCTGTCT 58 |||| || | ||||| || || | ||| |||||| ||||||||||||||||||| | Sbjct 585 TACTGGGCTGGATTACTGTTTGGACAACGAACTCATCAATAGGGTAAAACTAACCTGTAT 526 Query 59 CATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAAT 106 || || ||| ||||||||||||| ||||||||||||||||||||| || Sbjct 525 CACGATGGTATAAACCCAGCTCAAGTTCCCTATTAGTGGGTGAACTAT 478 >seq5499 Length=2003 Score = 107 bits (118), Expect = 3e-21 Identities = 89/108 (82%), Gaps = 2/108 (2%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG--TCATCAGTAGGGTAAAACTAACCTGTCT 58 |||| || | ||||| || || | ||| |||||| ||||||||||||||||||| | Sbjct 1419 TACTGGGCTGGATTACTGTTTGGACAACGAACTCATCAATAGGGTAAAACTAACCTGTAT 1478 Query 59 CATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAAT 106 || || ||| ||||||||||||| ||||||||||||||||||||| || Sbjct 1479 CACGATGGTATAAACCCAGCTCAAGTTCCCTATTAGTGGGTGAACTAT 1526 >seq3563 Length=4210 Score = 107 bits (118), Expect = 3e-21 Identities = 89/108 (82%), Gaps = 2/108 (2%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG--TCATCAGTAGGGTAAAACTAACCTGTCT 58 |||| || | ||||| || || | ||| |||||| ||||||||||||||||||| | Sbjct 3626 TACTGGGCTGGATTACTGTTTGGACAACGAACTCATCAATAGGGTAAAACTAACCTGTAT 3685 Query 59 CATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAAT 106 || || ||| ||||||||||||| ||||||||||||||||||||| || Sbjct 3686 CACGATGGTATAAACCCAGCTCAAGTTCCCTATTAGTGGGTGAACTAT 3733 >seq2551 Length=12392 Score = 107 bits (118), Expect = 3e-21 Identities = 70/76 (92%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||| |||| |||||||||||||||||| |||||||||||||||||||| ||||| || Sbjct 11027 TCATCATTAGG-TAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCAGGTTCCATA 11085 Query 91 TTAGTGGGTGAACAAT 106 ||||||||||||| || Sbjct 11086 TTAGTGGGTGAACTAT 11101 >seq10892 Length=1042 Score = 102 bits (112), Expect = 1e-19 Identities = 58/59 (98%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 59 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCT 1 >seq799 Length=31124 Score = 89.7 bits (98), Expect = 9e-16 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGC 238 || ||||||||||||||||||||||||||||||||||||||||||||| || |||||| Sbjct 16704 TGGACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACATATCTAGC 16762 >seq3691 Length=3329 Score = 78.8 bits (86), Expect = 2e-12 Identities = 123/175 (70%), Gaps = 6/175 (3%) Strand=Plus/Plus Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112 |||||||| |||| ||| |||||||||| ||| || ||| |||| ||||| ||||| Sbjct 477 CTGTCTCACGACGTTCTGAACCCAGCTCGCGTGCCACTTTAATGGGCGAACAGCCCAACC 536 Query 113 CTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169 ||| ||| |||| | | | ||| || ||||||||||||| | |||| | Sbjct 537 CTTGGGACC---TTCTCCAGCCCCAGGATGTGACGAGCCGACATCGAGGTGCCAAACCCC 593 Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224 ||||| ||||| | ||||| | | |||| |||||||| | ||| ||||| Sbjct 594 CCCGTCGATATGAGCTCTTGGGGGAGATCAGCCTGTTATCCCCGGCGTACCTTTT 648 >seq1837 Length=8728 Score = 73.4 bits (80), Expect = 7e-11 Identities = 122/175 (70%), Gaps = 6/175 (3%) Strand=Plus/Plus Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112 |||||||| |||| ||| |||||||||||||| || ||| |||| ||||| ||||| Sbjct 3140 CTGTCTCACGACGTTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACC 3199 Query 113 CTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169 ||| || | | | || | | | | || ||||||||||||| | |||| | Sbjct 3200 CTTGGGACGTACTACCGCCCC---AGGTTGCGACGAGCCGACATCGAGGTGCCAAACCTC 3256 Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224 ||||| | || || ||||| | | |||| |||||||| |||||||||| Sbjct 3257 CCCGTCGATGTGGACTCTTGGGGGAGATCAGCCTGTTATCCCCAGGGTAACTTTT 3311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854296737216