Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq3900 300 3e-79 seq1837 266 7e-69 seq3910 156 9e-36 seq2267 123 5e-26 seq1800 120 7e-25 seq3667 91.5 3e-16 >seq3900 Length=3081 Score = 300 bits (332), Expect = 3e-79 Identities = 271/337 (80%), Gaps = 18/337 (5%) Strand=Plus/Minus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 ||||||||||| ||||||||| | ||| |||||||||| ||||||||||||||| ||||| Sbjct 888 CTTTACAATCCTAAGACCTTCAT-CACTCACGCGGCAT-GGCTGGATCAGGCTTGCGCCC 831 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 |||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||| Sbjct 830 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTTTGGGCCGTGTCTCAGTCCCAA 771 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 |||| ||||||||||||||||||||| || |||||||||||||||| ||| ||||| || Sbjct 770 TGTGGCTGATCATCCTCTCAGACCAGCTATGGATCGTCGCCTTGGTAGGCCTTTACCCCA 711 Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGA-AGGTCCCCTGCT 239 ||||||||||||||| || |||||||| ||| ||||| | | || Sbjct 710 CCAACTAGCTAATCCAACGCGGGCTCATC--ATA-------CCCCGATAAAT------CT 666 Query 240 TTCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCA 299 ||| |||||||| ||||| |||||||| | |||||| | | ||| || || Sbjct 665 TTCCCCCGTAGGGCGTATACGGTATTAATTCCAGTTTCCCAGAGCTATTCCGCAGGGTTG 606 Query 300 GGCAGATTCCTAGGCATTACTCACCCGTCCGCCGCTC 336 || ||||||| | || ||||||||||||| ||| ||| Sbjct 605 GGTAGATTCCCACGCGTTACTCACCCGTCTGCCACTC 569 >seq1837 Length=8728 Score = 266 bits (294), Expect = 7e-69 Identities = 267/338 (79%), Gaps = 8/338 (2%) Strand=Plus/Plus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 |||||| ||||| |||| | | | |||||||| | | ||| ||||||||||||||| Sbjct 7376 TTTACATACCGAAATACTTCATCCTC-CACGCGGCGTCG-CTGCGTCAGGCTTTCGCCCA 7433 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 ||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7434 TTGCGCAAAATTCCTCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 7493 Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181 ||| ||||||||||||||||||||| || |||||| | |||||||||| ||||||||| Sbjct 7494 GTGGCTGATCATCCTCTCAGACCAGCTAAGGATCGAAGTCTTGGTGAGCTTTTACCTCAC 7553 Query 182 CAACTAGCTAATCCGACCTAGGCTCATCTGATAGCG--CAAGGCCCGAAGGTCCCCTGCT 239 |||||| ||||||| || ||| ||||| | | |||| | | ||| | | || | Sbjct 7554 CAACTAACTAATCCTACATAGACTCATTTCAAAGCGACCGAAGCCTTTA-CTGACCAGTA 7612 Query 240 TTCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAAC-GTTATCCCCCACTACC 298 ||| || | | |||||||||||||| | ||| ||| | ||| ||||||||| Sbjct 7613 TTCACCTGGGCAGCTTATGCGGTATTAGCCAGCCTTT-CGACCGGTTGTCCCCCACTTTG 7671 Query 299 AGGCAGATT-CCTAGGCATTACTCACCCGTCCGCCGCT 335 | ||||||| ||| || |||||||||||||||||||| Sbjct 7672 AAGCAGATTATCTATGCCTTACTCACCCGTCCGCCGCT 7709 >seq3910 Length=3064 Score = 156 bits (172), Expect = 9e-36 Identities = 135/166 (81%), Gaps = 1/166 (1%) Strand=Plus/Minus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 ||||||| || ||||||||||| || || ||||||||||||||||| |||||||||||| Sbjct 1012 CACGCGGGAT-GGCTGGATCAGACTCTCATCCATTGTCCAATATTCCTCACTGCTGCCTC 954 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| |||||||||||| |||||||| |||| |||||||| | | Sbjct 953 CCGTAGGAGTCTGGTCCGTGTCTCAGTACCAGTGTGGGGGATCTCCCTCTCAGGACCCCT 894 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATC 194 | |||| | |||||| ||| ||||| |||||||| |||||| Sbjct 893 AAAGATCACTGACTTGGTAGGCCGTTACCCTACCAACTATCTAATC 848 >seq2267 Length=6722 Score = 123 bits (136), Expect = 5e-26 Identities = 188/262 (72%), Gaps = 22/262 (8%) Strand=Plus/Minus Query 97 GTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCG 156 ||||||||||||||||||| ||| |||||||| ||||||||||||||||| ||| || Sbjct 6720 GTCTGGACCGTGTCTCAGTCCCATTGTGACTGGTCATCCTCTCAGACCAGCTACCCGTCA 6661 Query 157 TCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGC 216 | ||||||||| || ||||| | ||||| |||| || ||| |||||| || | Sbjct 6660 TAGCCTTGGTGGGCTTTTACCCCGCCAACAAGCTGATAGGACGCAGGCTCCTC------C 6607 Query 217 GCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGACGTATGCGGTATTAGCGTCCGT-T 275 | | |||||| | || ||| | ||| || |||||||| |||||| | Sbjct 6606 TCGATCGCCGAAGCT-------TTACTCTTGCGAGAC-CATCCGGTATTA--GTCCGTCT 6557 Query 276 TCCGAACG-TTATCCCCCACTACCAGGCAGATTCCTAGGCATTACTCACCCGTCCGCCGC 334 | ||| | ||||||| | | |||||||||| | | |||||||||||| |||||| Sbjct 6556 TTCGACGGATTATCCCTGAATCGAGGGCAGATTCCAACGTGTTACTCACCCGTTCGCCGC 6497 Query 335 TCTCA-AGAGA---AGCAAGCT 352 | ||| | ||| |||||||| Sbjct 6496 TTTCACATAGATCTAGCAAGCT 6475 >seq1800 Length=13846 Score = 120 bits (132), Expect = 7e-25 Identities = 127/165 (77%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 23 TTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGC 82 ||||| ||| ||| |||| |||||||| |||||||| |||||||||| |||||||||||| Sbjct 13377 TTCACTCACTCGGTATTG-CTGGATCAAGCTTTCGCTCATTGTCCAAAATTCCCCACTGC 13319 Query 83 TGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGA 142 ||||| | ||| ||| |||||||||||| ||| |||| |||||||| || ||| | Sbjct 13318 TGCCT-TTAAAAAAGTTTGGGCCGTGTCTCAGTCCCAATGTGGCTGATCATTCTTTCAAA 13260 Query 143 CCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTA 187 |||| || ||| | |||||| | |||| |||||||| Sbjct 13259 CCAGCTAAAGATAAGAGGCTTGGTAGTCTATTAAACAACCAACTA 13215 >seq3667 Length=4134 Score = 91.5 bits (100), Expect = 3e-16 Identities = 83/102 (81%), Gaps = 2/102 (2%) Strand=Plus/Plus Query 23 TTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGC 82 ||||| ||| ||| |||| |||||||| |||||||| |||||||| | |||||||||||| Sbjct 4035 TTCACTCACTCGGTATTG-CTGGATCAAGCTTTCGCTCATTGTCCGAAATTCCCCACTGC 4093 Query 83 TGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTG 124 ||||| | ||| ||| |||||||||||| ||| |||| Sbjct 4094 TGCCT-TTAAAAAAGTTTGGGCCGTGTCTCAGTCCCAATGTG 4134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071870438080