Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= AAMG01001188.1 Length=621 Score E Sequences producing significant alignments: (Bits) Value seq2969 259 2e-66 seq4721 80.6 1e-12 >seq2969 Length=4518 Score = 259 bits (286), Expect = 2e-66 Identities = 297/397 (75%), Gaps = 2/397 (1%) Strand=Plus/Plus Query 154 CATGTACTCGTCGTAGTTGCCCGGG-AACAGGCGCAGCTCGCCGTAGTCCAGGTCAGCCA 212 |||||| || || ||||| |||||| || ||| | | ||||||||||| |||| Sbjct 2751 CATGTAATCATCATAGTTACCCGGGTAAGAGGTA-ATTTTGCCGTAGTCCATGTCACAAG 2809 Query 213 TGTGGGTACACACGCTGTTCAGGAAGTGACGGTCGTGAGAGATGATGATCATCAGGCTGG 272 |||| ||||| || ||||||||| || ||||| || || || |||| ||| || | Sbjct 2810 TGTGCGTACAAACCTGGTTCAGGAAATGTCGGTCATGCGAAATAATGACCATGGTGCAGT 2869 Query 273 AACGCTGGGTCAGGATATTTTCCAGCCAGCGGATGGTGTTGATGTCCAAGTGGTTGGTCG 332 ||| | | | ||||| |||||||||||||||||||||||| |||| || |||||||| Sbjct 2870 CACGATTATTGACGATATCTTCCAGCCAGCGGATGGTGTTGATATCCAGGTTGTTGGTCG 2929 Query 333 GTTCGTCGAGCAACAGCACTTCAGGATCGGAAAACAGCGCCTGGGCCAGCAATACACGCA 392 |||| || |||| || || || || | | ||||| ||||| ||||||| ||||||| Sbjct 2930 GTTCATCAAGCAGCAATACGTCCGGGTTAGCGAACAGGGCCTGTACCAGCAACACACGCA 2989 Query 393 GCTTCCAGCCCGGGGACACTTCGCTCATCGGACCGAAGTGCTGCTCCAGCGGAATACCCA 452 | |||||||| || | || |||||||||| ||| |||||||| | |||||||||| Sbjct 2990 GTTTCCAGCCTGGCGCAACGGCGCTCATCGGGCCGGTATGCTGCTCGATAGGAATACCCA 3049 Query 453 GACCCAGCAGCAGCTCACCGGCACGGGATTCGGCGGTGTAGCCGTCCATCTCGGCGAACT 512 |||||||||| || || ||||| | |||||||||||||||||| |||||| |||| Sbjct 3050 CGCCCAGCAGCAATTCGCCAGCACGCGCTTCGGCGGTGTAGCCGTCATACTCGGCAAACT 3109 Query 513 CGGTTTCCAGCTCGGCCACGGCCATGCCGTCTTCTTC 549 || ||| || || || || ||| ||| ||||| Sbjct 3110 CGCCTTCGAGTTCTGCGGCGCGCATATAGTCATCTTC 3146 >seq4721 Length=2388 Score = 80.6 bits (88), Expect = 1e-12 Identities = 68/84 (81%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 313 GATGTCCAAGTGGTTGGTCGGTTCGTCGAGCAACAGCACTTCAGGATCGGAAAACAGCGC 372 ||||||||| ||||||||||||||||| |||| ||| | |||||| | ||||||| Sbjct 1161 GATGTCCAAATGGTTGGTCGGTTCGTCCAGCAGCAGAATTTCAGGCTTACTAAACAGCAA 1102 Query 373 CTGGGCCAGCAATACACGCAGCTT 396 |||||||| ||| || ||||| || Sbjct 1101 CTGGGCCATCAAGACGCGCAGTTT 1078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1881365483256