Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= AAMG01001286.1 Length=411 Score E Sequences producing significant alignments: (Bits) Value seq4079 136 1e-29 >seq4079 Length=2900 Score = 136 bits (150), Expect = 1e-29 Identities = 209/296 (71%), Gaps = 4/296 (1%) Strand=Plus/Plus Query 87 CACCAGGATGTCTTCCATGATCAGGTATTGCAGGTCGGAGCCAAAGAACATGTCCAGCGC 146 |||||| | ||||||| |||||||| | ||| ||| ||||| | ||||| | || ||| Sbjct 1092 CACCAGCACATCTTCCAGCATCAGGTACTCCAGATCGCAGCCATAAAACATATTCAACGC 1151 Query 147 GTCTTTCGGCGAGCAGATCATCGCTTCGCCACGGCGGTTGAGCGAGGTGTTCAGGGACAC 206 || |||| ||| ||||| | || |||||||| || | |||||||||||| ||| Sbjct 1152 ATCGGTCGGGTTGCAAATCATAGGCTCACCACGGCGATTCAACGAGGTGTTCAGCACCAC 1211 Query 207 GCCGTTGCCGGTCAGCACTTCCAGCTCTTTCATCATGTCGTAGTAGCGCGGGTTGTATTC 266 |||||||| || ||| || | | |||| | ||||| ||||| ||| | Sbjct 1212 ACCGTTGCCACGAAGGGTTTCAAGATGCTCAATCAGCGCATAGTAACGCGGATTG--GTG 1269 Query 267 GCGCT--TGAGCACCTGGGCGCGGGAGGTGCCATCTTCATGGACCACTTCCGGCACGCGG 324 || | ||| |||||| || || | ||| ||||||||||| ||||||||||| | || Sbjct 1270 GCCTTGGTGACCACCTGCGCCCGCGCGGTACCATCTTCATGCACCACTTCCGGGATACGA 1329 Query 325 GTCTTCCACTCTTCCGACACTTCAAAGGTGAAGGTCATGAACGGCGCCGGGTGATC 380 | ||||| | ||| |||||||| |||||||| | |||||||| || || Sbjct 1330 GATTTCCAGGCCGGGTTCACATCAAAGGTAAAGGTCATATAAGGCGCCGGATGGTC 1385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1212653420992