Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq9670 235 1e-59 seq7202 228 2e-57 seq3691 224 2e-56 seq1837 219 1e-54 seq3312 217 4e-54 seq8882 87.8 4e-15 >seq9670 Length=1159 Score = 235 bits (260), Expect = 1e-59 Identities = 313/421 (74%), Gaps = 18/421 (4%) Strand=Plus/Minus Query 4 CCGATCCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAG 63 || ||||||||||||| || | ||||||||| | ||||||||||||||||||| Sbjct 606 CCTATCCACAGGTCATCCCAAGAC--TTTTCAACGTCAACGGGTTCGGTCCTCCAGTTAG 549 Query 64 TAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTC 123 | ||||| |||||| |||||||||||| ||||||||| | |||| || |||| | Sbjct 548 TT-TTACCTAACCTT-CAACCTGCCCAT-GGATAGATCACAAAGTTT-CGCGTCTGCC-C 494 Query 124 CCAGCGACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGG--T 179 ||| |||||| ||||||| | |||||||||| ||||||| |||| || |||| | Sbjct 493 CCACTGACTAGTCGCCCTATTTGGACTCGCTTT-CGCTACGGCTCCGTTAATTTCGAACT 435 Query 180 TAAGCTTTGCCACTGAAAAT-AAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCC 238 ||| || |||| ||| | || ||| | | |||||| ||||||| |||| |||||| Sbjct 434 TAACCTC-GCCAGTGAGGAGCAACTCGTAGGCTCATTATGCAAAAGGCACGCCGTCACC- 377 Query 239 AACAAAGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTC 298 | | |||| || ||||||| || ||||||||||| ||||||||||| ||| Sbjct 376 ---ATTGCTCCCTCCGACCGCTTGTAAGCGCACGGTTTCAGGTACTATTTCACTCTCCTA 320 Query 299 TCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTA 358 | ||| || |||||| ||||||||| |||||||| ||||||||||||| | || |||| Sbjct 319 TTCGGAGTACTTTTCACCTTTCCCTTACGGTACTGGTTCACTATCGGTGTCTGAGGAGTA 260 Query 359 TTTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACT 418 ||||||||| |||||| | || ||||| || |||||| | ||| |||||| Sbjct 259 TTTAGCCTTACCAGATGGTGCTGGCAGATTCAAGCAGGATTTCTCCGGTCCCGCCCTACT 200 Query 419 C 419 | Sbjct 199 C 199 >seq7202 Length=1522 Score = 228 bits (252), Expect = 2e-57 Identities = 313/419 (75%), Gaps = 14/419 (3%) Strand=Plus/Minus Query 4 CCGATCCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAG 63 || |||||||| |||| || || | |||| |||| ||| |||||||||||||| | Sbjct 1283 CCTATCCACAGCTCATCCC-CTCAGTTTT-CAACCTAAGTGGGTTCGGTCCTCCACGACG 1226 Query 64 TAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTC 123 | ||||| ||| ||||||| |||| ||||||||| | | || |||||||| | Sbjct 1225 TC-TTACCGTCGCTT-CAACCTGGCCAT-GGATAGATCACTTCGCTT-CGGGTCTAGGAC 1170 Query 124 CCAGCGACTAGA-CGCCCTAGTAAGACTCGCTTTTCGCTACGCCT-CCCCTATTCGGTTA 181 |||||| | ||||||| | ||||||||||| ||||||| || ||||| ||||| Sbjct 1169 AT-GCGACTGAATCGCCCTATTCAGACTCGCTTT-CGCTACGGCTACCCCTCACGGGTTA 1112 Query 182 AGCTTTGCCACTGAAAA-TAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCA- 239 | || ||||| | | ||| |||| | | |||| | ||||||| |||| ||||||| Sbjct 1111 ACCTC-GCCACATATCACTAACTCGCAGGCTCATTCTTCAAAAGGCACGCTGTCACCCCT 1053 Query 240 ACAAAGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCT 299 || ||| |||||| || | ||||| ||| ||||||||||| |||||||||||||||| Sbjct 1052 ACTAAGGAGGCTCCAACGGTTTGTAAGCAAACGGTTTCAGGTACTATTTCACTCCCCTC- 994 Query 300 CCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTAT 359 ||||||| |||||| |||||||||||||||||| || | |||||||||| | ||||| Sbjct 993 CCGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCATCTGGGAGTAT 934 Query 360 TTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACT 418 |||| ||| | |||||| || ||||| || |||| || || |||| ||||| Sbjct 933 TTAGGCTTATCAGGTGGTCCTGACAGATTCACACGGGATTTCACGGGCCCCGTGCTACT 875 >seq3691 Length=3329 Score = 224 bits (248), Expect = 2e-56 Identities = 294/390 (75%), Gaps = 18/390 (5%) Strand=Plus/Plus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||||||||| ||| |||||| ||||| | ||||||||||||||| || || ||| Sbjct 2277 CCACAGGTCAT-CCGAAGACTTTT-CAACGTCAACCGGTTCGGTCCTCCACTTTGT-GTT 2333 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 ||| || ||| |||||||||||| || |||||| | ||||| || ||||| || | | Sbjct 2334 ACCAAAGCTT-CAACCTGCCCATGGG-TAGATCACAAGGTTT-CGCGTCTACAGCC-ACC 2389 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGG-----TTAAG 183 ||||| ||||||| | ||||| ||||| |||| || || | ||| | |||| Sbjct 2390 GACTATTCGCCCTATTCAGACTTGCTTT-CGCTTCGACTTCG-TATCTGAAATACTTAAT 2447 Query 184 CTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAA 243 ||| ||| ||| ||| ||| | |||||| ||||||| |||| ||||| |||| Sbjct 2448 CTT-GCCGGTGACCGTAACTCGTAGGGTCATTATGCAAAAGGCACGCCGTCACAACACAA 2506 Query 244 AGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCT-CTCCG 302 ||| | |||| || ||||||| || |||||||||||| |||||||||| | | |||| Sbjct 2507 AGTTG-CTCCGACCGCTTGTAAGCGTACGGTTTCAGGTTCTATTTCACCCGGGTACTCCC 2565 Query 303 GGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTA 362 | | |||||| ||||||| |||| ||||| ||||||||||||| |||| |||||||| Sbjct 2566 CG-TGCTTTTCACCTTTCCTTCACAGTACTCGTTCACTATCGGTGTCTCAGGAGTATTTA 2624 Query 363 GCCTTGGAGGATGGTCCCCCCATATTCAGA 392 ||||| | ||||||| || | ||||||| Sbjct 2625 GCCTTAGCGGATGGTGCCGCTTAATTCAGA 2654 >seq1837 Length=8728 Score = 219 bits (242), Expect = 1e-54 Identities = 317/423 (75%), Gaps = 27/423 (6%) Strand=Plus/Plus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 |||||| |||| || | || ||||||||| | || ||||||| |||||| ||| || Sbjct 4976 CCACAGCTCATCCC-CGAA-TTTTTCAACATTCGTGGGTTCGGACCTCCACGCAGT-GTC 5032 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 ||| ||| || |||| |||| || ||||||||| || || |||||||| | || | Sbjct 5033 ACCTGCGCTT-CATCCTGGCCAT-GGCTAGATCGCCTGGGTT-CGGGTCTACAGCACA-C 5088 Query 129 GACTAGA--CGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCC-CTATT--CGG-TTAA 182 |||| | ||||||| | ||||||||||| |||| || |||| ||||| || |||| Sbjct 5089 AACTAAAATCGCCCTATTCAGACTCGCTTT-CGCTTCGGCTCCGTCTATTTACGACTTAA 5147 Query 183 GCTTTGCCACTG---AAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCA 239 || | ||| | |||| ||| | | |||| | ||| |||||||| ||||||| Sbjct 5148 CCT----CGCTGTGTACCATAACTCGGCGGCTCATTCTTCAACAGGTACGCTGTCACCCT 5203 Query 240 ACAAAGT-GGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTC 298 | |||| ||||||| |||||||||| || ||||||||| | |||||||||||||||| Sbjct 5204 -CTAAGTAGGGCTCCAACTGCTTGTAAGCGCACGGTTTCACG-TCTATTTCACTCCCCT- 5260 Query 299 TCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTA 358 |||||||| |||||| |||||||||||||||||| ||||||||||||| | |||| Sbjct 5261 TCCGGGGTGCTTTTCACCTTTCCCTCACGGTACTTGTTCACTATCGGTTGCTGTTCAGTA 5320 Query 359 TTTAGCCTT-GGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTAC 417 |||||||| || | ||||| | | ||||| | | |||| |||| |||| ||||| Sbjct 5321 CTTAGCCTTACGAAG-TGGTCTTCGCGGATTCAACCGGAATTTCACGTGTTCCGGCCTAC 5379 Query 418 TCG 420 ||| Sbjct 5380 TCG 5382 >seq3312 Length=3868 Score = 217 bits (240), Expect = 4e-54 Identities = 253/324 (78%), Gaps = 23/324 (7%) Strand=Plus/Plus Query 78 TTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCGACTAGA-- 135 |||| |||| |||| || ||| || | | |||| |||||||| |||| | |||| | Sbjct 2665 TTCATCCTGGCCATGGG-TAGCTCACTCAGTTT-CGGGTCTAGTTCC-ACTGACTTTAAT 2721 Query 136 CGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCC--CCTATT-CGG--TTAAGCTTTGCC 190 ||||||| | ||||||||||| |||| || |||| | ||| | | |||| ||| ||| Sbjct 2722 CGCCCTATTCAGACTCGCTTT-CGCTTCGGCTCCGTCACATTACAGACTTAACCTT-GCC 2779 Query 191 ACTGAAAA-TAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGG 249 | |||||| ||| ||| || ||| || ||||||| |||||| ||||||| | ||| || Sbjct 2780 AGTGAAAACTAACTCGTTGGCCCGTTCTACAAAAAGTACGCCGTCACCC--CGAAG--GG 2835 Query 250 CTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCT 309 |||| ||| |||||| | ||| |||||||| |||||||||||||||| |||||||||| Sbjct 2836 CTCCGACTTCTTGTAAGTATATAGTTTCAGGTTCTATTTCACTCCCCTACCCGGGGTTCT 2895 Query 310 TTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTC---AGTCAGTAGTATTTAGCCT 366 |||| |||||||||||||||||| |||| |||||| || || || | | |||||||| Sbjct 2896 TTTCACCTTTCCCTCACGGTACTTGTTCGCTATCGATCTTGAGACA-TCG--TTTAGCCT 2952 Query 367 TGGAGGATGGTCCCCCCATATTCA 390 |||| | |||||| |||| ||||| Sbjct 2953 TGGAAGGTGGTCCTCCCAGATTCA 2976 >seq8882 Length=1254 Score = 87.8 bits (96), Expect = 4e-15 Identities = 167/232 (72%), Gaps = 13/232 (6%) Strand=Plus/Plus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 || ||| |||| ||| ||||||| ||||| | ||||||||||||||| || ||| Sbjct 1016 CCTCAGTTCAT-CCGAAAACTTTT-CAACGTTTACCGGTTCGGTCCTCCACGATGT-GTT 1072 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 | ||| | ||||||||| ||| ||| |||||| || | ||||| ||||| ||| Sbjct 1073 A-CCAGCGCTTCAACCTGACCA-AGGGTAGATCACCAAG-TTTCGCGTCTA-CAGCCACT 1128 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCC-CCTATTC---GGTTAAGC 184 ||||| ||||||| | |||||||| ||||||| || |||| | ||| |||| | Sbjct 1129 GACTAATCGCCCTATTCAGACTCGC-TTTCGCTTCGGCTCCTGTTCTTCAAACATTAA-C 1186 Query 185 TTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCAC 236 |||||| | | ||| ||| | | |||||| ||||||| ||| ||||| Sbjct 1187 CTTGCCAGTAACCGTAACTCGTAGGCTCATTATGCAAAAGGCACGACGTCAC 1238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241449940224