Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= AAMG01001435.1 Length=587 Score E Sequences producing significant alignments: (Bits) Value seq7114 228 3e-57 seq2625 116 1e-23 >seq7114 Length=1541 Score = 228 bits (252), Expect = 3e-57 Identities = 251/326 (77%), Gaps = 6/326 (2%) Strand=Plus/Plus Query 1 TCGATGTACGGCGGTGGTTTTGCCACGGTTCCGGCTTACCTGGCCGACCTGTTCGGTACG 60 |||||||||||||| || || ||||| ||||||| || |||||||||||||||||||| Sbjct 142 TCGATGTACGGCGGCGGCTTCGCCACCATTCCGGCCTATCTGGCCGACCTGTTCGGTACC 201 Query 61 CAGATGGTCGGTGCGATCCACGGTCGCCTGCTGACCGCCTGGGCAGCGGCGGGCGTCTTG 120 ||||||||||| || |||||||| || ||||||||||||||||| | || ||| || | Sbjct 202 CAGATGGTCGGCGCCATCCACGGCCGTCTGCTGACCGCCTGGGCCACCGCCGGCATCCTC 261 Query 121 GGCCCGGTGTTGGTGAACTATCTGCGTGAGTATCAG-TTGAGCATCGGCGTTGAACGCGC 179 ||||||||| ||||| || |||| ||||| ||| | | ||| |||| | || | Sbjct 262 GGCCCGGTGGTGGTGGGTTACATGCGCGAGTACCAGCTGGCGCA-CGGCAGTCCACCGTC 320 Query 180 TGCGGCCTATGACATCACCTTGTACATCCTCGCTGGCCTGCTGGTGCTGGGGTTCATCTG 239 || ||| ||| |||| ||||||||||||| ||| |||| ||||| || | ||||| Sbjct 321 ACAGGTCTACAACACCACCATGTACATCCTCGCCGGCATGCTCGTGCTCGGCCTGATCTG 380 Query 240 CAACCTGCTGGTGCGTCCGGTGGCCGACAAGT-ACTTCATGACCGACGCCGAACTGGCCG 298 ||| || ||||||| |||||||| | | || |||||||||| || ||||||||| Sbjct 381 CAATTTGTTGGTGCGCCCGGTGGCTG-CGCGTCACTTCATGACGCCCGACGAACTGGCAC 439 Query 299 CCGAGCAAGC-GCTGGGGCATGACAA 323 ||| |||| ||||| ||| || || Sbjct 440 GCGA-AAAGCAGCTGGCGCACGAGAA 464 >seq2625 Length=5431 Score = 116 bits (128), Expect = 1e-23 Identities = 223/323 (69%), Gaps = 18/323 (6%) Strand=Plus/Minus Query 1 TCGATGTACGGCGGTGGTTTTGCCACGGTTCCGGCTTACCTGGCCGACCTGTTCGGTACG 60 || ||||| ||||||||||||||||| | || || || ||||||||| |||| || || Sbjct 1847 TCCATGTATGGCGGTGGTTTTGCCACCATCCCTGCCTATCTGGCCGACTTGTTTGGCACC 1788 Query 61 CAGATGGTCGGTGCGATCCACGGTCGCCTGCTGACCGCCTGGGCAGCGGCGGGCGTCTTG 120 ||| | ||||| || || || || ||| ||||||| |||||| | | || ||| || | Sbjct 1787 CAGTTTGTCGGCGCCATTCATGGCCGCTTGCTGACTGCCTGGTCTACCGCAGGCATCGTC 1728 Query 121 GGCCCGGTGTTGGTGAACTATCTGCGTGAGTATCAGTTG--AGC---ATCGGCGTT---- 171 || || ||| | |||||||| ||| || | || ||| | | | || Sbjct 1727 GGGCCAGTGATTGTGAACTACATGCACGATGTGCGCCTGGAAGCAAAAACACCATTTGCG 1668 Query 172 GAACGCGCTGCGGCCTATGACATCACCTTGTACATCCTCGCTGGCCTGCTGGTGCTGGGG 231 || | ||| |||||| | ||| ||| || || | |||| | | ||| Sbjct 1667 GATATCTATGC-GCCTAT----TTTCCT--GACA--CTGGCGGCATTGCTTGGCATAGGG 1617 Query 232 TTCATCTGCAACCTGCTGGTGCGTCCGGTGGCCGACAAGTACTTCATGACCGACGCCGAA 291 || ||| |||||||||||| | ||||| ||| ||| ||||| |||||||| |||||| Sbjct 1616 TTTATCGCCAACCTGCTGGTCAGGCCGGTTGCCAGCAAATACTTTATGACCGATGCCGAA 1557 Query 292 CTGGCCGCCGAGCAAGCGCTGGG 314 || ||||| |||||| | ||||| Sbjct 1556 CTTGCCGCTGAGCAATCACTGGG 1534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1775785352640