Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= AAMG01001690.1 Length=455 Score E Sequences producing significant alignments: (Bits) Value seq3448 176 1e-41 seq3959 168 2e-39 >seq3448 Length=3662 Score = 176 bits (194), Expect = 1e-41 Identities = 285/407 (70%), Gaps = 21/407 (5%) Strand=Plus/Minus Query 3 ATCAGGAACACTTCACGGGCACCGGCGCCAAGGGCCGATTCACGGATGGCACGACGCTCC 62 ||||||||||| | |||||| |||| ||| ||||| ||| ||||| ||||| Sbjct 1368 ATCAGGAACACCTGTTTGGCACCAGCGCGCTCGGCGGATTCTTTGATCGCACGGCGCTCA 1309 Query 63 ACCTGGGTGGACTTGCACGGAACGCAGATCAGCACACGAGGGCTGGGCTGCAGGA--AAC 120 |||||||| || | ||| || ||||| | | || ||||| || | || | | | Sbjct 1308 ACCTGGGTAGAGCCGACCGGCACACAGATGATGATGCGTGGGCTAGG--GGAGAACCAGC 1251 Query 121 TGTTTTCGTGAACCTTGTTGATGAAGTACTGCAGCATCTTCTCGCAGACGCTGAAGTCGG 180 | |||||| || || ||||||| ||| ||||| | |||| || | ||||||||| Sbjct 1250 GGGATTCGTGTACTTTACGGATGAAGAACTTGAGCATTTGCTCGGTGATGGTGAAGTCGG 1191 Query 181 CGATCACGCCGTCTTTCATCGGACGAATGGCAGCAATATTGCCTGGTGTACGGCCGAGCA 240 | || ||||||||||||||||| || || || ||||| |||| | ||||| |||| Sbjct 1190 CAATTACGCCGTCTTTCATCGGGCGTATCGCCTGGATATTCGCTGGCGCGCGGCCCAGCA 1131 Query 241 TGCGCTTGGCCTCGGTGCCGA-CGGCAACGACACTTTTCTGATTACC-ATGGGTC----- 293 ||| || || || | ||| | || || | |||| ||| ||||| |||||| Sbjct 1130 TGCTTTTCGCATCAGAGCCTACCGCCAGCAACACCTTT----TTACCGTTGGGTCCGCCT 1075 Query 294 ------CGAATGGCCACAACCGATGGCTCATTCAGGACGATACCGCGCTCGCGCACGTAA 347 ||||||||||| || || ||||| | ||| |||| ||| ||||||| ||| Sbjct 1074 TCGGTACGAATGGCCACCACAGACGGCTCGTCCAGCACGACACCCTTGCCGCGCACATAA 1015 Query 348 ATAAGGGTGTTGGCAGTGCCCAGGTCAATGGAAAGATCGCTGGAAAA 394 || || |||||||| ||||| |||||||||| ||||| |||| || Sbjct 1014 ATCAGCGTGTTGGCTGTGCCAAGGTCAATGGCGAGATCATTGGAGAA 968 >seq3959 Length=3013 Score = 168 bits (186), Expect = 2e-39 Identities = 178/232 (77%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 36 GCCGATTCACGGATGGCACGACGCTCCACCTGGGTGGA-CTTGCACGGAACGCAGATCAG 94 || ||||| ||| || || ||||||||||||||||| | || ||| ||||| | ||| Sbjct 3003 GCAGATTCCTTGATCGCGCGGCGCTCCACCTGGGTGGAACCAGC-CGGCACGCACACCAG 2945 Query 95 CACACGAGGGCTGGGCTGCAGGAAACTGTTTTCGTGAACCTTGTTGATGAAGTACTGCAG 154 ||| || |||||||| ||||||| | || ||| ||||| |||||||||| || ||| Sbjct 2944 CACGCGTGGGCTGGGGCGCAGGAAGCGCGATTTGTGCACCTTCTTGATGAAGTGCTTCAG 2885 Query 155 CATCTTCTCGCAGACGCTGAAGTCGGCGATCACGCCGTCTTTCATCGGACGAATGGCAGC 214 ||| ||| | | |||| |||||||| ||||||||||||||||| || |||| | Sbjct 2884 CATTGCTTCGGTGTAGGTGAAATCGGCGATGACGCCGTCTTTCATCGGGCGGATGGTGGT 2825 Query 215 AATATTGCCTGGTGTACGGCCGAGCATGCGCTTGGCCTCGGTGCCGACGGCA 266 || | ||| || ||||| |||||||| |||||||||| | |||||||||| Sbjct 2824 GATGTGGCCGGGGGTACGACCGAGCATCTGCTTGGCCTCCGCGCCGACGGCA 2773 Score = 78.8 bits (86), Expect = 3e-12 Identities = 58/68 (85%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 351 AGGGTGTTGGCAGTGCCCAGGTCAATGGAAAGATCGCTGGAAAACATGCCACGCAGTTTC 410 || || ||||| |||||||| || ||||| || ||| |||| |||||||| ||||||||| Sbjct 2756 AGCGTATTGGCCGTGCCCAGATCGATGGACAGGTCGTTGGAGAACATGCCGCGCAGTTTC 2697 Query 411 TTGAACAT 418 |||||||| Sbjct 2696 TTGAACAT 2689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1353436403904