Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq3900 251 1e-64 seq1837 212 1e-52 seq3910 165 1e-38 >seq3900 Length=3081 Score = 251 bits (278), Expect = 1e-64 Identities = 225/282 (80%), Gaps = 0/282 (0%) Strand=Plus/Minus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 ||||||||||||| ||||||||||||| | | |||| || ||||||||||||||||||| Sbjct 1205 CCCACGCTTTCGCACCTCAGCGTCAGTACCGGACCAGTAAGCCGCCTTCGCCACTGGTGT 1146 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 |||| || ||||||||| |||||||| |||||| || |||||| || ||||| | || Sbjct 1145 TCCTGCGAATATCTACGAATTTCACCTCTACACTCGCAATTCCACTTACCTCTTCCATAC 1086 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACT 180 |||||| | |||| ||||| |||| | ||||||| | | |||||| |||||| Sbjct 1085 TCAAGATACCCAGTATCAAAGGCAGTTCCAGAGTTGAGCTCTGGGATTTCACCCCTGACT 1026 Query 181 TGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG 240 | | |||||||| || |||||| |||| ||| |||| | |||||| ||| ||| || Sbjct 1025 TAAATATCCGCCTACGTGCGCTTTACGCCCAGTAATTCCGAACAACGCTAGCCCCCTTCG 966 Query 241 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTC 282 |||||||||||||||||||||| ||||||||| ||||| ||| Sbjct 965 TATTACCGCGGCTGCTGGCACGAAGTTAGCCGGGGCTTCTTC 924 >seq1837 Length=8728 Score = 212 bits (234), Expect = 1e-52 Identities = 216/279 (77%), Gaps = 2/279 (1%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||||||||||| |||||||||||| | |||| || ||||||||| |||| ||| Sbjct 7058 CCCACGCTTTCGTACCTCAGCGTCAGGTGTGACCCAGAAAGTCGCCTTCGCTACTGATGT 7117 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 ||||||| ||||||||||||||||||||||||| ||||||||| || ||||| | | Sbjct 7118 TCCTCCGAATATCTACGCATTTCACCGCTACACTCGGAATTCCACTTTCCTCTATCACCC 7177 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATG-GGTTGAGCCCATAGTTTTCACATCTGAC 179 || || | | |||| || |||||| || || ||||||||| | ||| |||| ||| Sbjct 7178 TCTAGCAGACCAGTATCGAATGCA-TCTCTGAGGTTGAGCCTCAGGCTTTAACATTCGAC 7236 Query 180 TTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTAC 239 || |||||||| | |||||| |||| ||| |||| | ||||||||| ||| | Sbjct 7237 TTAATCCGCCGCCTACGTACGCTTTACGCCCAGTAATTCCGAACAACGCTTGCACCCTCC 7296 Query 240 GTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTT 278 || |||||||||||||||||||| ||||||||| |||| Sbjct 7297 GTCTTACCGCGGCTGCTGGCACGGAGTTAGCCGGTGCTT 7335 >seq3910 Length=3064 Score = 165 bits (182), Expect = 1e-38 Identities = 210/284 (74%), Gaps = 4/284 (1%) Strand=Plus/Minus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTT-ACTGTCCAGCAATCCGCCTTCGCCACTGGTG 59 |||||||||||| | ||||||||| | |||| || || | |||||||| | |||| Sbjct 1376 CCCACGCTTTCGTCCATCAGCGTCAATCCACTGGT-AGTAACCTGCCTTCGCAATTGGTA 1318 Query 60 TTCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCA 119 |||| ||||||| ||||||||||||||||| |||| || | || |||| | Sbjct 1317 TTCCATGTAATATCTAAGCATTTCACCGCTACACTACATATTCTAGTTACTTC-CCAGTA 1259 Query 120 CT-CAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGA 178 | |||| | |||| |||| || | ||||||| | |||||| |||| Sbjct 1258 ATTCAAGTCCAGCAGTATCAATGGCCGTTCCACCGTTGAGCGATGGGCTTTCACCACTGA 1199 Query 179 CTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTA 238 ||| | |||||||| ||||||| |||||||||||||||||||||||||| ||| Sbjct 1198 CTTACAGATCCGCCTACGGACCCTTTAAACCCAATAAATCCGGATAACGCTTGCACCCTC 1139 Query 239 CGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTC 282 |||||||||||||||||||||||| ||||||||| ||||||| Sbjct 1138 CGTATTACCGCGGCTGCTGGCACGGAGTTAGCCGATCCTTATTC 1095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828702961506