Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= AAMG01002011.1 Length=284 Score E Sequences producing significant alignments: (Bits) Value seq2382 156 7e-36 seq8278 123 4e-26 >seq2382 Length=6299 Score = 156 bits (172), Expect = 7e-36 Identities = 179/241 (74%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 42 TTCTGCAGGTGGCGACCCTGCTACGTCTGGCATTGAACGTCGCCTCCACGCGGGTGGTGA 101 || ||| | || ||||| |||| ||||||||||||||||| || || || || |||||| Sbjct 392 TTTTGCTGATGACGACCATGCTGCGTCTGGCATTGAACGTGGCGTCTACCCGCGTGGTGC 451 Query 102 TGCTCCACGGCCAGGACGGCCATGCCGCTGCCGGTAAGGTGATCCAGGCCTTCGGTGAGG 161 || | ||||| | ||||| | || || ||||| || || | || || || | Sbjct 452 TGACTGAAGGCCATGCCGGCCCGGATGCAGCGGGTAAAGTCATTGAAGCATTTGGCCACT 511 Query 162 TGGTGATCGGCGGTAACTACGTGGTCGGTATCGTGGTGTTCGCGATCCTGATGATCATCA 221 | ||||||| |||||||||| || |||||||||||||| | |||||||| ||| |||| Sbjct 512 TCCTGATCGGTGGTAACTACGCCGTGGGTATCGTGGTGTTTGTGATCCTGACGATTATCA 571 Query 222 ACTTTGTGGTGGTGACCAAGGGCGCCGGGCGGATTTCCGAGGTGAGCGCGCGGTTTACCC 281 |||| |||| | ||||| || || || || ||| | || || |||| |||||||||| Sbjct 572 ACTTCACGGTGATCACCAAAGGTGCTGGCCGTATTGCTGAAGTCGGCGCACGGTTTACCC 631 Query 282 T 282 | Sbjct 632 T 632 >seq8278 Length=1334 Score = 123 bits (136), Expect = 4e-26 Identities = 156/212 (74%), Gaps = 3/212 (1%) Strand=Plus/Minus Query 9 GCGGCCGCTGGATTTCGCGGTGTTCCCGA-CGTATTCTGCAGGTGGCGACCCTGCTACGT 67 ||| |||||||| ||| | | ||||||| ||| |||| | || | || |||| || Sbjct 210 GCGCCCGCTGGAATTCACCATTTTCCCGATCGTG--CTGCTGATGACCACGATGCTGCGG 153 Query 68 CTGGCATTGAACGTCGCCTCCACGCGGGTGGTGATGCTCCACGGCCAGGACGGCCATGCC 127 ||||| ||||||| |||||||| || |||||| |||| | ||||| |||| | | Sbjct 152 CTGGCGCTGAACGTGGCCTCCACCCGCGTGGTGCTGCTGGAAGGCCACACCGGCACGGGC 93 Query 128 GCTGCCGGTAAGGTGATCCAGGCCTTCGGTGAGGTGGTGATCGGCGGTAACTACGTGGTC 187 || ||||| ||||| ||| |||| ||||| | | |||||||||| |||| || |||| Sbjct 92 GCGGCCGGCAAGGTCATCGAGGCGTTCGGCCACTTCCTGATCGGCGGCAACTTCGCGGTC 33 Query 188 GGTATCGTGGTGTTCGCGATCCTGATGATCAT 219 || | | |||||||||||| || || |||| Sbjct 32 GGCCTGATCGTGTTCGCGATCTTGGTGGTCAT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 809505209502