Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= AAMG01002049.1 Length=571 Score E Sequences producing significant alignments: (Bits) Value seq10285 105 2e-20 seq5366 102 3e-19 seq5585 84.2 8e-14 >seq10285 Length=1097 Score = 105 bits (116), Expect = 2e-20 Identities = 131/177 (74%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 144 ATGGGCCCGTCCGGGTTGATCGCGATTCTCGCCGGCTGGTTCACCACGGAAATCGGCCGT 203 ||||| || ||||| || | || || || |||||||||| |||||| ||||||||||| Sbjct 869 ATGGGGCCTGCCGGGGTGGTAGCCATCCTGGCCGGCTGGTACACCACAGAAATCGGCCGC 928 Query 204 CAGCCGTGGGTGGTCTACGGCCTGATGCGCACGGCGGATGCGTCCTCCGGGCATAGC-CT 262 ||||| |||||||| || ||| | |||| ||||| |||||| | ||| | | | Sbjct 929 CAGCCATGGGTGGTATATGGCATTTTGCGTACGGCAGATGCGGTGACGCCGCACACCACC 988 Query 263 GGTGCAGATGACGATTACGCTGGTGTTGTTCGTGGTGGTGTACTTCGCGCTGTTCGG 319 ||| || || || | || ||| ||||| |||||| | ||| |||| |||||||| Sbjct 989 AGTGAAG-TGGCGCTCACATTGGGCTTGTTTGTGGTGATCTACCTCGCCCTGTTCGG 1044 >seq5366 Length=2054 Score = 102 bits (112), Expect = 3e-19 Identities = 131/178 (74%), Gaps = 2/178 (1%) Strand=Plus/Minus Query 144 ATGGGCCCGTCCGGGTTGATCGCGATTCTCGCCGGCTGGTTCACCACGGAAATCGGCCGT 203 ||||| || |||| | |||| ||| | || ||||||| || || ||||||||||| Sbjct 1899 ATGGGGCCAGCCGGTATTGTCGCTATTTTGGCTGGCTGGTATACAACTGAAATCGGCCGC 1840 Query 204 CAGCCGTGGGTGGTCTACGGCCTGATGCGCACGGCGGATGCGTCCTCCGGGCATAGC-CT 262 |||||||||||||| || ||| | |||||||||| |||||| | | ||||| | | Sbjct 1839 CAGCCGTGGGTGGTGTATGGCGTTTTGCGCACGGCTGATGCGGTCACGCCGCATACCACC 1780 Query 263 GGTGCAGATGACGATTACGCTGGTGTTGTTCGTGGTGGTGTACTTCGCGCTGTTCGGT 320 ||| || | | | ||||| | ||||| |||||| | ||| ||||||| |||||| Sbjct 1779 AGTGAAG-TAGCACTCACGCTTGGCTTGTTTGTGGTGATCTACCTCGCGCTATTCGGT 1723 >seq5585 Length=1964 Score = 84.2 bits (92), Expect = 8e-14 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 150 CCGTCCGGGTTGATCGCGATTCTCGCCGGCTGGTTCACCACGGAAATCGGCCGTCAGCCG 209 ||| |||| || ||||| | |||||||||||||| ||| || ||||| || |||||| Sbjct 400 CCGGCCGGCTTTATCGCCCTGGTCGCCGGCTGGTTCGTCACCGAGATCGGGCGACAGCCG 341 Query 210 TGGGTGGTCTACGGCCTGATGCGCACGGCGGATGCG 245 |||||||| || || ||| ||||||| || || ||| Sbjct 340 TGGGTGGTGTATGGACTGCTGCGCACCGCCGACGCG 305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1724591540672