Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= AAMG01002051.1 Length=353 Score E Sequences producing significant alignments: (Bits) Value seq5738 120 6e-25 seq9040 102 2e-19 >seq5738 Length=1905 Score = 120 bits (132), Expect = 6e-25 Identities = 249/356 (70%), Gaps = 15/356 (4%) Strand=Plus/Plus Query 2 GACCGCCTGCGCCATGTGGCGGAGCGCGCCGAGCTGGGTGAAGGCCGCGAAGCGATCATC 61 |||||||||||| | | || || || |||||| |||||||| ||| |||||| | || Sbjct 167 GACCGCCTGCGCTTTATTGCTGAACGGGCCGAGTTGGGTGAACACCGTGAAGCGGTATTC 226 Query 62 GCCGTGACCATTCCCGAGAAGCCCGGCAGC-TTCAAGGCGTTCTG-CGAGGCCGTGGGCA 119 |||||||||||||| || || ||| | || |||||| | ||||| ||| | |||||| Sbjct 227 GCCGTGACCATTCCGGA-AACCCCTGGTGCGTTCAAGACATTCTGCCGATTGC-TGGGCA 284 Query 120 AGCGCCAGATCACCGAATTCAACTACCGTTTCCACTCCGGCAGCGAGGCGCACATCTTTG 179 | ||| | |||||||| || || ||||| | | | |||| |||| || || |||| Sbjct 285 ATCGCAATATCACCGAGTTTAATTACCGCTATGCCGATGCCAGCCAGGCACATATTTTTG 344 Query 180 TCGGCGTG-CAGACCCACCCCGACACCGACCCCCGCAGC-GCGCTGATCGCCAGC-CTGA 236 |||||||| | | | | || | ||||| | |||| | | | | | || ||| Sbjct 345 TCGGCGTGTCGGTACAAAGCCCA-ACCGAAC----CAGCTGAAATTA-CACGTGCTCTGG 398 Query 237 CCGAGCAGGGTTTCCCGGTGCTGGACCTGACCGAGAATGAGCTGGCCAAGCTGCACATCC 296 | | ||||| | |||||||||||| ||||| |||| || |||| | | Sbjct 399 ATGCGGCCGGTTTAAAAGCCTTGGACCTGACCGGCAATGAAATGGCTAAATTGCATTTGC 458 Query 297 GCCATATGGTCGGCGGCCATGCGGCGCACG-TCAGCAATGAAGTGGTGTTCCGCTT 351 |||| |||| |||||||||||| | || | ||| |||||||| || | |||||| Sbjct 459 GCCACCTGGTTGGCGGCCATGCGCCTCAAGCACAG-AATGAAGTCGTTTACCGCTT 513 >seq9040 Length=1232 Score = 102 bits (112), Expect = 2e-19 Identities = 249/367 (68%), Gaps = 33/367 (9%) Strand=Plus/Minus Query 2 GACCGCCTGCGCCATGTGGCGGAGCGCGCCGAGCTGGGTGAAGGCCGCGAAGCGATCATC 61 || ||||||||| | | || |||||||||||||| || || ||| |||||| || | Sbjct 407 GATCGCCTGCGCTTTATTGCCGAGCGCGCCGAGCTCGGCGAGCACCGGGAAGCGGTCTTT 348 Query 62 GCCGTGACCATTCCCGAGAAGCCCGGCAGC-TTCAAGGCGTTCTGCGAGGCCGTGGGCAA 120 || ||||| || || || || ||||| || ||||| | || ||| ||||||| Sbjct 347 GCGGTGACTATCCCGGA-AACCCCGGGTGCATTCAAAACATTTTGCCGCTTGCTGGGCAA 289 Query 121 GCGCCAGATCACCGAATTCAACTACCGTT-TCCACTCCGGCAGCGAGGCGCACATCTTTG 179 ||| | |||||||| || || ||||||| | || | || |||| || || |||| Sbjct 288 CCGCAACATCACCGAGTTTAATTACCGTTATGCAGAT-GCCAATCAGGCACATATTTTTG 230 Query 180 TCGGCGT------GCAGACCCACCCCGA--CACCGACCCCCGCA-GCGCGCTG-AT--CG 227 ||||||| ||| | | |||| || || | || | |||||| || || Sbjct 229 TCGGCGTCTCGGTGCAAAGCATGACCGAGCCAGCGGAAATCACACGTGCGCTGGATGCCG 170 Query 228 CCAGCCTGACCGAGCAGGGTTTCCCGGTGCTGGACCTGACCGAGAATGAGCTGGCCAAGC 287 | |||||| |||| | |||||||||| ||||| |||||||| Sbjct 169 CTGGCCTGAA--AGCAT-------------TAGACCTGACCGGCAATGAAATGGCCAAGT 125 Query 288 TGCACATCCGCCATATGGTCGGCGGCCATGCGGCGCACG-TCAGCAATGAAGTGGTGTTC 346 ||||| | || || |||||||||||||||| |||| | ||| ||||| ||||||| | Sbjct 124 TGCACTTGCGTCACCTGGTCGGCGGCCATGCACCGCAAGCGCAG-AATGAGGTGGTGTAC 66 Query 347 CGCTTCG 353 ||||||| Sbjct 65 CGCTTCG 59 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027075852608