Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq3900 390 3e-106 seq1837 315 2e-83 seq3910 268 3e-69 seq1800 217 4e-54 seq917 93.3 1e-16 seq3667 89.7 2e-15 seq2267 87.8 5e-15 >seq3900 Length=3081 Score = 390 bits (432), Expect = 3e-106 Identities = 293/343 (85%), Gaps = 1/343 (0%) Strand=Plus/Plus Query 158 CCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCG 217 ||||||| ||||||||||||||| ||||| ||| |||||||||||||||| |||| | Sbjct 688 CCCGCGTTGGATTAGCTAGTTGGTGGGGTAAAGGCCTACCAAGGCGACGATCCATAGCTG 747 Query 218 ACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGC 277 |||||||| ||||| |||||||||| |||||||||||| ||||||||||||||||||| Sbjct 748 GTCTGAGAGGATGATCAGCCACATTGGGACTGAGACACGGCCCAAACTCCTACGGGAGGC 807 Query 278 AGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGAT 337 ||||||||||||||||| ||||||||| ||||||||| |||| | |||||||||| ||| Sbjct 808 AGCAGTGGGGAATATTGGACAATGGGCGCAAGCCTGATCCAGCCATGCCGCGTGAGTGAT 867 Query 338 GAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATAATGACGGTACTTGAGGAGG 397 ||||| ||| || | |||||||||| || | |||||||||||||||| | || | Sbjct 868 GAAGGTCTTAGGATTGTAAAGCTCTTTCACCGGAGAAGATAATGACGGTATCCGGAGAAG 927 Query 398 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457 ||||||||||||||| |||||||||||||||||||||||| |||||||||||||| | || Sbjct 928 AAGCCCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGGGCTAGCGTTGTTCG 987 Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 |||||||| |||||||||| | |||||| || | ||||||| Sbjct 988 GAATTACT-GGGCGTAAAGCGCACGTAGGCGGATATTTAAGTC 1029 >seq1837 Length=8728 Score = 315 bits (348), Expect = 2e-83 Identities = 271/334 (81%), Gaps = 1/334 (0%) Strand=Plus/Minus Query 167 GATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAG 226 |||||| |||||||| |||||| ||| |||||| | ||||| |||| | ||||||| Sbjct 7566 GATTAGTTAGTTGGTGAGGTAAAAGCTCACCAAGACTTCGATCCTTAGCTGGTCTGAGAG 7507 Query 227 GGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGG 286 | ||||| |||||| |||||||||||||||||||| |||||||||||||||||||||| | Sbjct 7506 GATGATCAGCCACACTGGAACTGAGACACGGTCCAGACTCCTACGGGAGGCAGCAGTGAG 7447 Query 287 GAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCCTT 346 |||| |||| |||||||| ||||||||| ||||| |||||||||| ||||||| || Sbjct 7446 GAATTTTGCGCAATGGGCGAAAGCCTGACGCAGCGACGCCGCGTGGAGGATGAAGTATTT 7387 Query 347 CGGGTCGTAAAGCTCTGTCCTCAAGGAAGATAATGACGGTACTTGAGGAGGAAGCCCCGG 406 ||| ||||| ||||| ||| ||||||||| |||| |||||||| |||| Sbjct 7386 CGGTATGTAAACTCCTGTCAGTGGGGATGATAATGACAGTACCCACAGAGGAAGCACCGG 7327 Query 407 CTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTG 466 |||||| |||||||||||||||||||| ||| |||| || |||||| | |||||||||| Sbjct 7326 CTAACTCCGTGCCAGCAGCCGCGGTAAGACGGAGGGTGCAAGCGTTGTTCGGAATTACT- 7268 Query 467 GGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 |||||||||| || |||||| || ||||||| Sbjct 7267 GGGCGTAAAGCGTACGTAGGCGGCGGATTAAGTC 7234 >seq3910 Length=3064 Score = 268 bits (296), Expect = 3e-69 Identities = 362/501 (72%), Gaps = 24/501 (5%) Strand=Plus/Plus Query 21 AGAGCGGCGGACGGGTGAGTAACGCGTGGGTAACCTGCCCTGTACACACGGATAACATAC 80 ||||||||| ||||||| | ||| |||| | |||||||| | || ||||| | | Sbjct 703 AGAGCGGCGTACGGGTGCGGAACACGTGTGCAACCTGCCTTTATCAGGGGGATAGCCTTT 762 Query 81 CGAAAGGTATGCTAATACGAGATAATATACTTTTATCGCATGGTAGAAGTATCAAAGCTC 140 ||||||| | |||||| |||||||| || || |||| | | | ||| ||| Sbjct 763 CGAAAGGAAGATTAATACCCCATAATATA-TTGAATGGCATCATTTGATATTGAAAACTC 821 Query 141 CGGCGGTACAG-GATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAA 199 ||| || | || ||| | | |||| |||||| ||||||||| ||||||||| |||||| Sbjct 822 CGGTGG-ATAGAGATGGGCACGCGCAAGATTAGATAGTTGGTAGGGTAACGGCCTACCAA 880 Query 200 GGCGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTC 259 | | |||| ||| | |||||||||| |||| ||||| ||| |||||||||||| | Sbjct 881 GTCAGTGATCTTTAGGGGTCCTGAGAGGGAGATCCCCCACACTGGTACTGAGACACGGAC 940 Query 260 CAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAG 319 || |||||||||||||||||||||| ||||||||| ||||||| | || ||||| ||| Sbjct 941 CAGACTCCTACGGGAGGCAGCAGTGAGGAATATTGGACAATGGATGAGAGTCTGATCCAG 1000 Query 320 CAACGCCGCGTGAGCGATGAAGG-CCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA-- 376 | | |||||||| || || || ||| |||| ||||| ||| | | ||||| Sbjct 1001 CCATCCCGCGTGAAGGACGACGGCCCTATGGGTTGTAAACTTCTTTTGTACGAGAAGAAA 1060 Query 377 ------------TAA-----TGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCC 419 ||| |||||||| | || ||| ||||||||| |||||| Sbjct 1061 CAACATTACGTGTAATGTCTTGACGGTATCGTAAGAATAAGGATCGGCTAACTCCGTGCC 1120 Query 420 AGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGT 479 |||||||||||||||||| |||| || ||||||||||||| ||| | ||| |||||||| Sbjct 1121 AGCAGCCGCGGTAATACGGAGGGTGCAAGCGTTATCCGGATTTA-TTGGGTTTAAAGGGT 1179 Query 480 GCGTAGGTGGTTTCTTAAGTC 500 |||||| || | |||||| Sbjct 1180 CCGTAGGCGGATCTGTAAGTC 1200 >seq1800 Length=13846 Score = 217 bits (240), Expect = 4e-54 Identities = 221/282 (78%), Gaps = 6/282 (2%) Strand=Plus/Plus Query 221 TGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGC 280 ||| || ||||| |||||||||| |||||||||||| ||||||| | ||||||| Sbjct 13262 TGAAAGAATGATCAGCCACATTGGGACTGAGACACGGCCCAAACTTTTTTAA-AGGCAGC 13320 Query 281 AGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAA 340 |||||||||| ||| |||||| || ||||| |||| |||||| ||| ||||| || || Sbjct 13321 AGTGGGGAATTTTGGACAATGAGCGAAAGCTTGATCCAGCAATACCGAGTGAGTGAAGAC 13380 Query 341 GGC-CTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATAATGACGGTACTTGAGGAGGAA 399 ||| | ||| |||||||||| || | ||||| || |||||| |||||| | | ||| Sbjct 13381 GGCTAATTAGGTTGTAAAGCTCTTTCATTAAGGAGGAAAATGACAGTACTTAAAAAAGAA 13440 Query 400 GCCCCGGCTAACTA--CGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457 | |||||||| || |||||||||||||||||||||||| || || ||| |||| || Sbjct 13441 GTTCCGGCTAA-TACCCGTGCCAGCAGCCGCGGTAATACGGGAGGAGCGAGCATTATTCG 13499 Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 499 |||| | | ||||||||| || ||||||||||| |||||| Sbjct 13500 GAATGA-TTAGGCGTAAAGAGTTTGTAGGTGGTTTTTTAAGT 13540 >seq917 Length=33008 Score = 93.3 bits (102), Expect = 1e-16 Identities = 102/132 (77%), Gaps = 4/132 (3%) Strand=Plus/Plus Query 370 AGGAAGATAATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTAC--GTGCCAGCAGCCG 427 |||| || |||||| |||||| | | || | |||||||| ||| ||| ||||||||| Sbjct 5163 AGGAGGAAAATGACAGTACTTAAAAAAGATGTTCCGGCTAA-TACCCGTGTCAGCAGCCG 5221 Query 428 CGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGT 487 |||||||||| || || ||| |||| |||||| | | ||||||||| || |||||| Sbjct 5222 CGGTAATACGGGAGGAGCGAGCATTATTCGGAATGA-TTAGGCGTAAAGAGTTTGTAGGT 5280 Query 488 GGTTTCTTAAGT 499 ||||| || ||| Sbjct 5281 GGTTTTTTTAGT 5292 >seq3667 Length=4134 Score = 89.7 bits (98), Expect = 2e-15 Identities = 84/106 (79%), Gaps = 1/106 (1%) Strand=Plus/Minus Query 237 CACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCA 296 |||||||| |||||||||||| ||||||| | ||||||||||||||||| | | | Sbjct 4134 CACATTGGGACTGAGACACGGCCCAAACTTTTTTAA-AGGCAGCAGTGGGGAATTTCGGA 4076 Query 297 CAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGG 342 ||||| || ||||| |||| |||||| ||| ||||| || || || Sbjct 4075 CAATGAGCGAAAGCTTGATCCAGCAATACCGAGTGAGTGAAGACGG 4030 >seq2267 Length=6722 Score = 87.8 bits (96), Expect = 5e-15 Identities = 165/242 (68%), Gaps = 17/242 (7%) Strand=Plus/Plus Query 23 AGCGGCGGACGGGTGAGTAACGCGTGGGTAACCTGCCCTGTACACACGGATAACATACCG 82 ||||||| ||||||||||||| ||| || || ||||||| | || |||||| || Sbjct 6496 AGCGGCGAACGGGTGAGTAACACGTTGG-AATCTGCCCTCGATTCAGGGATAATCCGTCG 6554 Query 83 AAAGGTATGCTAATACGAGATAATATACTTTTATCGCATGGTAGAAGTATCAAAGCTCCG 142 |||| ||||||| ||| | | |||| | |||| ||||| || Sbjct 6555 AAAGACGGACTAATACCGGATGGTCT--------CGCAAG-----AGTA---AAGCTTCG 6598 Query 143 GCGGTACAGGATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGC 202 ||| | |||| || ||||| || |||| ||||| ||||| || |||||||| Sbjct 6599 GCGATCGAGGAGGAGCCTGCGTCCTATCAGCTTGTTGGCGGGGTAAAAGCCCACCAAGGC 6658 Query 203 GACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAA 262 | || ||||| | |||||||| ||| | | |||| ||| |||||||||||||||| Sbjct 6659 TATGACGGGTAGCTGGTCTGAGAGGATGACCAGTCACAATGGGACTGAGACACGGTCCAG 6718 Query 263 AC 264 || Sbjct 6719 AC 6720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497419000064