Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq3900 399 5e-109 seq1837 365 1e-98 seq3910 311 2e-82 seq1800 172 1e-40 seq917 86.0 2e-14 >seq3900 Length=3081 Score = 399 bits (442), Expect = 5e-109 Identities = 330/400 (83%), Gaps = 2/400 (1%) Strand=Plus/Plus Query 9 GAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTA 68 || |||||||||||||||| |||||||||||||||||||||||| |||||||||||||| Sbjct 924 GAAGAAGCCCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGGGCTAGCGTTG 983 Query 69 TCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCT 128 | |||||||||||||||||||| | |||||| || | ||||||||| ||||||| | Sbjct 984 TTCGGAATTACTGGGCGTAAAGCGCACGTAGGCGGATATTTAAGTCAGGGGTGAAATCCC 1043 Query 129 ATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTG 188 | ||||||| | || ||||| ||||| |||| || |||| | || || ||||| Sbjct 1044 AGAGCTCAACTCTGGAACTGCCTTTGATACTGGGTATCTTGAGTATGGAAGAGGTAAGTG 1103 Query 189 GAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCG 248 ||||| | ||||||| |||||||| |||||||||| | |||||||||||||||||||||| Sbjct 1104 GAATTGCGAGTGTAGAGGTGAAATTCGTAGATATTCGCAGGAACACCAGTGGCGAAGGCG 1163 Query 249 GCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGAT 308 |||| |||| | | |||||| |||||| |||||||||||||||||||||||||||||| Sbjct 1164 GCTTACTGGTCCGGTACTGACGCTGAGGTGCGAAAGCGTGGGGAGCAAACAGGATTAGAT 1223 Query 309 ACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGCTCCG 368 |||||||||||||||||||||||| |||||| ||| ||| |||| | | || | || Sbjct 1224 ACCCTGGTAGTCCACGCCGTAAACTATGAATGTTAGCCGTC-GGGCAGTTTACTG-TTCG 1281 Query 369 GTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 ||| |||||| |||||| ||| ||| ||||||||||| Sbjct 1282 GTGGCGCAGCTAACGCATTAAACTCTCCGCCTGGGGAGTA 1321 >seq1837 Length=8728 Score = 365 bits (404), Expect = 1e-98 Identities = 323/401 (81%), Gaps = 2/401 (0%) Strand=Plus/Minus Query 9 GAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTA 68 |||||||| |||||||||| |||||||||||||||||||| ||| |||| || |||||| Sbjct 7339 GAGGAAGCACCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGAGGGTGCAAGCGTTG 7280 Query 69 TCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCT 128 | |||||||||||||||||||| || |||||| || ||||||| | || |||| || Sbjct 7279 TTCGGAATTACTGGGCGTAAAGCGTACGTAGGCGGCGGATTAAGTCGAATGTTAAAGCCT 7220 Query 129 ATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTG 188 ||||||||| | | ||| || || |||| ||||||| | || || ||||| Sbjct 7219 GAGGCTCAACCTCAGAGATGCATTCGATACTGGTCTGCTAGAGGGTGATAGAGGAAAGTG 7160 Query 189 GAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCG 248 ||||||| ||||||||||||||||||||||||||| ||||||||| |||| ||||||||| Sbjct 7159 GAATTCCGAGTGTAGCGGTGAAATGCGTAGATATTCGGAGGAACATCAGTAGCGAAGGCG 7100 Query 249 GCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGAT 308 ||| |||| | ||||| |||||| |||||||||||||||||||| ||||||||| Sbjct 7099 ACTTTCTGGGTCACACCTGACGCTGAGGTACGAAAGCGTGGGGAGCAAACGGGATTAGAT 7040 Query 309 ACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCAT-AAGTGCTCC 367 |||| ||||||||||||||||||||||| || |||||||| | || | || | || | Sbjct 7039 ACCCCGGTAGTCCACGCCGTAAACGATGGATGCTAGGTGTAGCGG-GTATCGACCCCTGC 6981 Query 368 GGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 |||||| ||| ||||| |||| || || ||||||||||| Sbjct 6980 TGTGCCGTAGCTAACGCGTTAAGCATCCCGCCTGGGGAGTA 6940 >seq3910 Length=3064 Score = 311 bits (344), Expect = 2e-82 Identities = 306/391 (78%), Gaps = 8/391 (2%) Strand=Plus/Plus Query 19 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTA 78 ||||||||| |||||||||||||||||||||||| |||| || ||||||||||||| ||| Sbjct 1105 CGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGGTGCAAGCGTTATCCGGATTTA 1164 Query 79 CTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGCTCAAC 138 |||| |||||||| |||||| || | |||||||| |||||||| | || ||||||| Sbjct 1165 TTGGGTTTAAAGGGTCCGTAGGCGGATCTGTAAGTCAGTGGTGAAAGCCCATCGCTCAAC 1224 Query 139 CCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAATTCCTAG 198 || || || |||| ||||| || || || | | | | || | |||| ||| Sbjct 1225 GGTGGAACGGCCATTGATACTGCTGGACTTGAATTACTGGGAAGTAACTAGAATATGTAG 1284 Query 199 TGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCT-GG 257 |||||||||||||||| ||||||||| |||| |||| | |||||||| | || || Sbjct 1285 TGTAGCGGTGAAATGCTTAGATATTACATGGAATACCAATTGCGAAGGCAGGTTACTACC 1344 Query 258 ACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTA 317 | || | |||| |||| | |||||||||||||||| |||||||||||||||||||||| Sbjct 1345 AGTG-GATTGACGCTGATGGACGAAAGCGTGGGGAGCGAACAGGATTAGATACCCTGGTA 1403 Query 318 GTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGCTCCGGTGCCGCAG 377 ||||||||||||||||||| ||||||| ||| |||| ||| || | ||| | || Sbjct 1404 GTCCACGCCGTAAACGATGGATACTAGCTGTTGGGG-GCA-----ACTTCAGTGGCTAAG 1457 Query 378 CAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | || | |||||||| |||||||||||||| Sbjct 1458 CGAAAGTGATAAGTATCCCACCTGGGGAGTA 1488 >seq1800 Length=13846 Score = 172 bits (190), Expect = 1e-40 Identities = 250/347 (72%), Gaps = 6/347 (2%) Strand=Plus/Plus Query 1 TACTTGAGGAGGAAGCCCCGGCTAACTAC--GTGCCAGCAGCCGCGGTAATACGTAGGGG 58 ||||| | | |||| |||||||| ||| ||||||||||||||||||||||| || Sbjct 13427 TACTTAAAAAAGAAGTTCCGGCTAA-TACCCGTGCCAGCAGCCGCGGTAATACGGGAGGA 13485 Query 59 GCTAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAG 118 || ||| |||| |||||| | | ||||||||| || ||||||||||| |||||| | Sbjct 13486 GCGAGCATTATTCGGAATGATTAGGCGTAAAGAGTTTGTAGGTGGTTTTTTAAGTTGAAA 13545 Query 119 GTGAAAGGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGG- 177 | | | || ||||||| | ||| |||||| ||||||| | Sbjct 13546 GAAACAAATTAAAGCTCAACTTTATACATTTTTTCAAAACTGATAAACTAGAGTATAAAT 13605 Query 178 AGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAG 237 || || | ||||||| ||| || || | | |||| || |||| ||| ||||| | | Sbjct 13606 AGAGGATAATGGAATTTCTATTGGAGTGATAAAATATGTTGATAATAGAAGGAAGATCTA 13665 Query 238 TGGCGAAGGCGGCTTGCTGGACTGTA-ACTGACACTGAGGCTCGAAAGCGTGGGGAGCAA 296 | |||||||| | |||| | || |||||||||||| ||||||| |||| ||| | Sbjct 13666 TAGCGAAGGCAATTATCTGGG-TATATACTGACACTGAGAAACGAAAGCTTGGGTAGCGA 13724 Query 297 ACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTA 343 || ||||||||||||| ||||||||| |||||||||||||| | ||| Sbjct 13725 ACGGGATTAGATACCCCGGTAGTCCATGCCGTAAACGATGAGTGCTA 13771 >seq917 Length=33008 Score = 86.0 bits (94), Expect = 2e-14 Identities = 79/98 (81%), Gaps = 3/98 (3%) Strand=Plus/Plus Query 18 CCGGCTAACTAC--GTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAA 75 |||||||| ||| ||| ||||||||||||||||||| || || ||| |||| ||||| Sbjct 5196 CCGGCTAA-TACCCGTGTCAGCAGCCGCGGTAATACGGGAGGAGCGAGCATTATTCGGAA 5254 Query 76 TTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 113 | | | ||||||||| || ||||||||||| || ||| Sbjct 5255 TGATTAGGCGTAAAGAGTTTGTAGGTGGTTTTTTTAGT 5292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203054581248