Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq2766 311 2e-82 seq3567 295 1e-77 seq1297 246 6e-63 seq7504 178 2e-42 seq181 170 4e-40 seq9199 154 3e-35 seq209 120 6e-25 seq3728 113 9e-23 >seq2766 Length=8717 Score = 311 bits (344), Expect = 2e-82 Identities = 227/260 (87%), Gaps = 5/260 (2%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGCT---CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128 ||||||||||||||| | || | ||| || | |||||||||||||||||||||||||| Sbjct 5360 CTTCTTAGAGGGACTTTTGGGTAATCAAACCCAAGGAAGTTTGAGGCAATAACAGGTCTG 5301 Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCAT 188 |||||||||||||||||||||||||||||||||||||||||| | ||||||||||| Sbjct 5300 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTTCA- 5242 Query 189 CACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCAT 248 ||||||||||| ||| | |||||||||| | ||| | ||||| |||||||||| ||| Sbjct 5241 CACCTTGGCCGACAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGATCAT 5183 Query 249 TGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGA 308 ||||||| ||| ||||||||||||||| ||||||||||||| ||||||||| |||||||| Sbjct 5182 TGCAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGA 5123 Query 309 TTACGTCCCTGCCCTTTGTA 328 ||||||||||||||||||| Sbjct 5122 CTACGTCCCTGCCCTTTGTA 5103 >seq3567 Length=8923 Score = 295 bits (326), Expect = 1e-77 Identities = 222/259 (86%), Gaps = 3/259 (1%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGCTCA--AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 ||||||||||||||| | || | | |||| | ||||||| ||||||||||||||||||| Sbjct 235 CTTCTTAGAGGGACTTTTGG-TGAGTAGCCAAAGGAAGTTCGAGGCAATAACAGGTCTGT 293 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189 ||||||||||||||||||||||||||||||||||||||||| | || |||| | Sbjct 294 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATCGGTTCATCGAGCATACA 353 Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249 |||||| | | || |||||||||||||||| ||| | ||||||||||||||||| |||| Sbjct 354 ACCTTGACTGAAAAGTCTGGGTAATCTTGTGAAAACCGGTCGTGCTGGGGATAGATCATT 413 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 | |||||||| ||||||||||||||| |||||||| |||| ||||||| | ||| ||||| Sbjct 414 GAAATTATTGATCTTCAACGAGGAATTCCTAGTAAACGCGAGTCATCAACTCGCATTGAT 473 Query 310 TACGTCCCTGCCCTTTGTA 328 ||||||||||||||||||| Sbjct 474 TACGTCCCTGCCCTTTGTA 492 >seq1297 Length=21369 Score = 246 bits (272), Expect = 6e-63 Identities = 211/260 (81%), Gaps = 3/260 (1%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGCT---CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128 ||||||||||||||| | || | ||| || | ||||||| |||||||||||||||||| Sbjct 236 CTTCTTAGAGGGACTTTTGGGTAATCAAACCAAAGGAAGTTGGAGGCAATAACAGGTCTG 295 Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCAT 188 |||||||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 296 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGCGTTCAACGAGTATAC 355 Query 189 CACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCAT 248 |||||| || |||||||||||||||| | || ||||| | |||||||| | Sbjct 356 AACCTTGATCGATAGGTCTGGGTAATCTTTTGAATGCGCATCGTGATAGGGATAGACTGT 415 Query 249 TGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGA 308 ||||||| | |||| |||||||||| |||||||| ||| ||||||||| || |||| Sbjct 416 TGCAATTTTCAGTCTTGAACGAGGAATTCCTAGTAAACGCAAGTCATCAGCTTGCATTGA 475 Query 309 TTACGTCCCTGCCCTTTGTA 328 |||||||||||||||||||| Sbjct 476 TTACGTCCCTGCCCTTTGTA 495 >seq7504 Length=1463 Score = 178 bits (196), Expect = 2e-42 Identities = 198/259 (76%), Gaps = 4/259 (2%) Strand=Plus/Plus Query 71 GCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||||||| | |||| | ||||| || | ||||| ||||||||||||||| Sbjct 230 GCTTCTTAGAGGGATTTTCGGTGTTTAGCCGCACGA-GATTGAG-CAATAACAGGTCTGT 287 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189 ||||||||||||||| | |||| ||||||||||||||||| | | || || | | | Sbjct 288 GATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGGCGAAATCAGCGTGCTG-TA 346 Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249 || | || |||| | ||||| | | ||| | || |||||| ||||| | ||| Sbjct 347 TCCATTCTCGAAAGGGATTGGTAAACCCATGAAAATTTGCCGTGCTTGGGATCGGAAATT 406 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 ||||||||| | | |||||||||| || |||||| ||| ||||||| | ||| |||| Sbjct 407 GCAATTATTTTCCGTGAACGAGGAATTCCAAGTAAGTGCGAGTCATCAACTCGCTCTGAT 466 Query 310 TACGTCCCTGCCCTTTGTA 328 ||||||||||||||||||| Sbjct 467 TACGTCCCTGCCCTTTGTA 485 >seq181 Length=46220 Score = 170 bits (188), Expect = 4e-40 Identities = 169/214 (79%), Gaps = 6/214 (3%) Strand=Plus/Plus Query 118 TAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGC- 176 ||||||||||||||||||||||||| ||||| ||||||||||||||||||||| | || Sbjct 5969 TAACAGGTCTGTGATGCCCTTAGATATTCTGAGCCGCACGCGCGCTACACTGA-TGCGCT 6027 Query 177 CAACGAG--TTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGC 234 ||||||| |||| | |||| || ||||||||||| |||| | || ||||| Sbjct 6028 CAACGAGTATTCA--ATCTTGATCGATAGGTCTGGGTACTCTTTTGAATGCACATCGTGA 6085 Query 235 TGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCA 294 | |||||||| |||||||| |||| |||||||||| |||||| | ||| |||| Sbjct 6086 TAGGGATAGACTGTTGCAATTTCCAGTCTTGAACGAGGAATTCCTAGTGAACGCAAGTCA 6145 Query 295 TCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||||| | |||||||||||||||||| ||||| Sbjct 6146 TCAGCTTACATTGATTACGTCCCTGCCCCTTGTA 6179 >seq9199 Length=1215 Score = 154 bits (170), Expect = 3e-35 Identities = 195/262 (74%), Gaps = 17/262 (6%) Strand=Plus/Minus Query 73 TTCTTAGAGGGACTATCGGC-TCAAGCCG-ATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||| | | ||| || ||||| | | |||| | |||||||||||||||| Sbjct 415 TTCTTAGAGGAATTGGCGGTATCGAGCCGCACGAAAGTGCG---CAATAACAGGTCTGTG 359 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCC---AACGAGTTCA 187 |||||||||||||||| |||| ||||||| ||||||||| ||| | |||| | || Sbjct 358 ATGCCCTTAGATGTTCGGGGCTGCACGCGTGCTACACTG---GAGTCTGCAACGTGCTC- 303 Query 188 TCACCTTGGCCGGAAGGTCTG-GGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGC 246 | |||||| | |||| ||||| | | ||| | |||| | ||||||| | Sbjct 302 ----CATGGCCGAAGGGTCACTGGTAAACCGTTGAAAAGATTCCGTGATCGGGATAGGGA 247 Query 247 ATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTT 306 |||||||||||| | ||| |||||||||| ||||||||| | | ||||||| | ||| | Sbjct 246 ATTGCAATTATTTCCCTTGAACGAGGAATTCCTAGTAAGTGTGAGTCATCATCTCGCTCT 187 Query 307 GATTACGTCCCTGCCCTTTGTA 328 | ||||||||||| |||||| Sbjct 186 TAATACGTCCCTGCGATTTGTA 165 >seq209 Length=45561 Score = 120 bits (132), Expect = 6e-25 Identities = 125/164 (76%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 134 CCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCT 193 |||||||||||| |||||| ||||||||||||||||| |||||||| | |||| Sbjct 29072 CCCTTAGATGTTATGGGCCACACGCGCGCTACACTGATGCGTTCAACGAGTATACAACCT 29131 Query 194 TGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAA 253 || || |||||||||||||||| | || | ||| | |||||||| |||||| Sbjct 29132 TGATCGATAGGTCTGGGTAATCTTTTGAATGATCATAGTGATAGGGATAGACTGTTGCAA 29191 Query 254 TTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCA 297 || | |||| |||||||||| |||||||| ||| ||||||| Sbjct 29192 TTTTCAGTCTTGAACGAGGAATTCCTAGTAAACGCAAGTCATCA 29235 >seq3728 Length=5006 Score = 113 bits (124), Expect = 9e-23 Identities = 111/142 (78%), Gaps = 1/142 (1%) Strand=Plus/Minus Query 187 ATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGC 246 || |||||| || |||||||||||||||| | || || || | |||||||| Sbjct 4262 ATAACCTTGATCGATAGGTCTGGGTAATCTTTTGAATGCGCATCATGATAGGGATAGACT 4203 Query 247 ATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTT 306 |||||||| | |||| |||||||||| |||||||| ||| ||||||||| || || Sbjct 4202 GTTGCAATTTTCAGTCTTGAACGAGGAATTCCTAGTAA-CGCAAGTCATCAGCTTGCATT 4144 Query 307 GATTACGTCCCTGCCCTTTGTA 328 |||||||||||||||||||||| Sbjct 4143 GATTACGTCCCTGCCCTTTGTA 4122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947085521408