Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq3910 273 5e-71 seq3900 212 1e-52 seq1837 161 2e-37 seq2267 77.0 7e-12 >seq3910 Length=3064 Score = 273 bits (302), Expect = 5e-71 Identities = 287/371 (77%), Gaps = 11/371 (3%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 ||||||||||||||||||||||||| ||||||| || | ||| |||| |||||| Sbjct 1127 GGCTGCTGGCACGGAGTTAGCCGATCCTTATTCTTACGATACCGTCAAGACATTACACGT 1068 Query 61 GGAAGGTT--TTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCAC 118 || ||| || ||| | || ||||||||||||||| || ||| || || |||||||| Sbjct 1067 --AATGTTGTTTCTTCTCGTACAAAAGAAGTTTACAACCCATAGGGCCGTCGTCCTTCAC 1010 Query 119 GCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGT 178 || ||||||| |||||||||| ||||||| ||||||||||||||||||||||||||| Sbjct 1009 GCGGGATGGCTGGATCAGACTCTCATCCATTGTCCAATATTCCTCACTGCTGCCTCCCGT 950 Query 179 AGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCC 238 |||||| ||| |||||||||||| ||| ||||||||| || |||||||| ||||||| Sbjct 949 AGGAGTCTGGTCCGTGTCTCAGTACCAGTGTGGGGGATCTCCCTCTCAGGACCCCTAAAG 890 Query 239 ATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAACGCATCCCCATC--- 295 ||| | || ||| ||||||||||| || |||| ||||| ||| | |||||| Sbjct 889 ATCACTGACTTGGTAGGCCGTTACCCTACCAACTATCTAATCTTGCGCGTGCCCATCTCT 830 Query 296 GTACACCGATGAATCTTTAATGATGATACCATGCAATCTCATCATACCATCAGGTATTAA 355 | ||||| || | || ||| || | | |||| || ||| ||| || |||||||| Sbjct 829 ATCCACCG--GAGTTTTCAAT-ATCAAATGATGCCAT-TCAATATATTATGGGGTATTAA 774 Query 356 TCTTTCTTTCG 366 |||| |||||| Sbjct 773 TCTTCCTTTCG 763 >seq3900 Length=3081 Score = 212 bits (234), Expect = 1e-52 Identities = 187/232 (81%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 82 AAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCT 141 ||||| |||||||||| ||| |||||||| |||||| | ||||||| |||| || Sbjct 894 AAAGAGCTTTACAATCCTAAGA-CCTTCATCACTCACGCGGCATGGCTGGATCAGGCTTG 836 Query 142 CGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGT 201 || |||||| |||||||||| |||||||||||||||||||||||||| |||||||||||| Sbjct 835 CGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTTTGGGCCGTGTCTCAGT 776 Query 202 TCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTA 261 ||||||||| || | |||||||||| | |||| ||||| | || ||| |||| ||| Sbjct 775 CCCAATGTGGCTGATCATCCTCTCAGACCAGCTATGGATCGTCGCCTTGGTAGGCCTTTA 716 Query 262 CCCCGCCTACTACCTAATGGAACGCATCCCCATCGTACACCGATGAATCTTT 313 |||| || |||| ||||| ||||| | |||| ||| ||||| ||||||| Sbjct 715 CCCCACCAACTAGCTAATCCAACGCGGGCTCATCATACCCCGATAAATCTTT 664 >seq1837 Length=8728 Score = 161 bits (178), Expect = 2e-37 Identities = 154/196 (79%), Gaps = 1/196 (1%) Strand=Plus/Plus Query 84 AGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCG 143 || |||||||| ||| | || |||||||| ||||| | | |||| |||| || ||| Sbjct 7371 AGGAGTTTACATACCGAAATAC-TTCATCCTCCACGCGGCGTCGCTGCGTCAGGCTTTCG 7429 Query 144 TCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTC 203 |||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 7430 CCCATTGCGCAAAATTCCTCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTC 7489 Query 204 CAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACC 263 || ||||| || | |||||||||| | ||| |||| || || |||| || ||||| Sbjct 7490 CAGTGTGGCTGATCATCCTCTCAGACCAGCTAAGGATCGAAGTCTTGGTGAGCTTTTACC 7549 Query 264 CCGCCTACTACCTAAT 279 | || |||| ||||| Sbjct 7550 TCACCAACTAACTAAT 7565 >seq2267 Length=6722 Score = 77.0 bits (84), Expect = 7e-12 Identities = 80/105 (76%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 183 GTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCG 242 || |||||||||||||||| ||| |||| | | |||||||||| | ||| || || Sbjct 6720 GTCTGGACCGTGTCTCAGTCCCATTGTGACTGGTCATCCTCTCAGACCAGCTACCCGTCA 6661 Query 243 TAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAACGCA 287 ||| || ||||||| |||||||||| || | || || | ||||| Sbjct 6660 TAGCCTTGGTGGGCTTTTACCCCGCCAACAAGCTGATAGGACGCA 6616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068670824832