Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020
15-10-27] 12,086 sequences; 74,456,230 total letters
Query= NC_007189.1
Length=6907
Score E
Sequences producing significant alignments: (Bits) Value
seq2792 318 3e-83
>seq2792
Length=4928
Score = 318 bits (352), Expect = 3e-83
Identities = 227/258 (88%), Gaps = 2/258 (1%)
Strand=Plus/Minus
Query 2122 GGCCTCTGGCTCGGCTCTTGCCTGCGTCCTCAGTCCCCGGCCAAGGATGAGATCGCGGCA 2181
|||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||
Sbjct 4796 GGCCTCTGGCTCGGCTCTTGCCTGTGCCCTCAGACCCCGGCCAAGGATGAGATCGCGGCA 4737
Query 2182 TGATTGAGTTTGACCCGCACCACCGTATCGACTTGACCGGCCCTTGGGCCGGTTTTTCTT 2241
|||||||||| ||||||||||| ||||| || ||||||||||| ||||||| || | ||
Sbjct 4736 TGATTGAGTTCGACCCGCACCATCGTATAGATCTGACCGGCCCTCGGGCCGG-TTCTATT 4678
Query 2242 TCCTCGGTGATCGTCTGATCAC-GCCCGAAGGCCGCGAGCTACTTCCTGAAGATCTGGCC 2300
||||||||||||| |||||||| || ||||| |||||||| || || |||||| || ||
Sbjct 4677 TCCTCGGTGATCGCCTGATCACTTCCGGAAGGTCGCGAGCTGCTCCCGGAAGATTTGCCC 4618
Query 2301 TGGCTGTCACTCACCGCCTGCCAAGCGCAGGAATGGCGCCGGATGATGGAAGCTGCACGC 2360
||||| || |||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 4617 TGGCTATCGCTCACCGCCTGCCAAGCGCAGGAATGGCTCCGGATGCTGGAAGCTGCACGC 4558
Query 2361 TCGGTGCCGTCGATCGAC 2378
|||| |||| | || ||
Sbjct 4557 TCGGAACCGTTGCTCAAC 4540
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 21984210455384
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |