Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_007189.1 Length=6907 Score E Sequences producing significant alignments: (Bits) Value seq2792 318 3e-83 >seq2792 Length=4928 Score = 318 bits (352), Expect = 3e-83 Identities = 227/258 (88%), Gaps = 2/258 (1%) Strand=Plus/Minus Query 2122 GGCCTCTGGCTCGGCTCTTGCCTGCGTCCTCAGTCCCCGGCCAAGGATGAGATCGCGGCA 2181 |||||||||||||||||||||||| | |||||| |||||||||||||||||||||||||| Sbjct 4796 GGCCTCTGGCTCGGCTCTTGCCTGTGCCCTCAGACCCCGGCCAAGGATGAGATCGCGGCA 4737 Query 2182 TGATTGAGTTTGACCCGCACCACCGTATCGACTTGACCGGCCCTTGGGCCGGTTTTTCTT 2241 |||||||||| ||||||||||| ||||| || ||||||||||| ||||||| || | || Sbjct 4736 TGATTGAGTTCGACCCGCACCATCGTATAGATCTGACCGGCCCTCGGGCCGG-TTCTATT 4678 Query 2242 TCCTCGGTGATCGTCTGATCAC-GCCCGAAGGCCGCGAGCTACTTCCTGAAGATCTGGCC 2300 ||||||||||||| |||||||| || ||||| |||||||| || || |||||| || || Sbjct 4677 TCCTCGGTGATCGCCTGATCACTTCCGGAAGGTCGCGAGCTGCTCCCGGAAGATTTGCCC 4618 Query 2301 TGGCTGTCACTCACCGCCTGCCAAGCGCAGGAATGGCGCCGGATGATGGAAGCTGCACGC 2360 ||||| || |||||||||||||||||||||||||||| ||||||| |||||||||||||| Sbjct 4617 TGGCTATCGCTCACCGCCTGCCAAGCGCAGGAATGGCTCCGGATGCTGGAAGCTGCACGC 4558 Query 2361 TCGGTGCCGTCGATCGAC 2378 |||| |||| | || || Sbjct 4557 TCGGAACCGTTGCTCAAC 4540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 21984210455384