Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_009552.2 Length=40863 Score E Sequences producing significant alignments: (Bits) Value seq8929 179 1e-40 seq3145 136 1e-27 >seq8929 Length=1248 Score = 179 bits (198), Expect = 1e-40 Identities = 286/405 (71%), Gaps = 4/405 (1%) Strand=Plus/Plus Query 37653 TGAAACAATATTTAGACTTGCTGCAAGACATCTTAGAAAACGGCGTCGAAAAAGAAGACC 37712 |||| | ||| | || ||||||| || | | ||| |||| | |||||| |||| Sbjct 811 TGAAGCCGTATCTGGATCTGCTGCAGCACGTGCTGGAACACGGTGCCGAAAAGTCCGACC 870 Query 37713 GAACGGGCGTCGGCACGCTGTCGGTGTTCGGCCGCCAGCTCCGCTTCAA-CTTACAAGAT 37771 | || || |||||||| ||||||||| | ||| | |||||| | || || | Sbjct 871 GCACCGGTACCGGCACGCGCAGCGTGTTCGGCTGGCAGATGCGCTTCGATCTCACT-GCC 929 Query 37772 GGATTTCCGCTCGTGACAACGAAAAAATTGCATATCCGCTCCATCATTTATGAACTGCTT 37831 || |||||||| || || || || || ||||| | ||||| ||||| | || ||||| Sbjct 930 GGCTTTCCGCTGGTCACCACCAAGAAGCTGCATCTGCGCTCGATCATCCACGAGCTGCTG 989 Query 37832 TGGTTTTTAAAAGGCGATACGAACGTCCGCTATTTGCAGGAGAATGGCGTGACGATTTGG 37891 |||||| | | |||||||| ||| || | ||| || | || || ||| || ||| Sbjct 990 TGGTTTCTGCAGGGCGATACCAACATCGGGTATCTGAAAGACAACCAGGTGCGTATCTGG 1049 Query 37892 GATGAGTGGGCGGACGAAAACGGCGATCTCGGCCCGATTTACGGCGCGCAATGGCGCTCG 37951 || || ||||| ||||| || ||||| || |||||| | |||||| ||| ||||| Sbjct 1050 GACGAATGGGCCGACGACAATGGCGACCTTGGCCCGGTGTACGGCAAGCAGTGGCGGCGT 1109 Query 37952 TGGAAGGGAGCAGACGGGAAAACCATCGACCAGATCGCA-TGGGTTGTCGAAGAGATCAA 38010 |||| || | ||||| ||||||||||| ||| ||| | ||||| |||||||| Sbjct 1110 TGGACCGGCCCGGACGGCGTCGAGATCGACCAGAT-GCAGTGGCTGGTCGATGAGATCAA 1168 Query 38011 ACGAAATCCGCATTCACGCCGGCTGCTGGTGAGCGCTTGGAATGT 38055 ||| || ||| |||| ||||||||| || | ||||| ||||| || Sbjct 1169 ACGCAACCCGGATTCGCGCCGGCTGGTGATCAGCGCCTGGAACGT 1213 >seq3145 Length=4143 Score = 136 bits (150), Expect = 1e-27 Identities = 392/596 (66%), Gaps = 18/596 (3%) Strand=Plus/Plus Query 37709 GACCGAACGGGCGTCGGCACGCTGTCGGTGTTCGGCCGCCAGCTCCGCTTCAACTTACAA 37768 ||||| || ||| ||| ||| | |||||||| ||| |||| | || || ||| | | Sbjct 522 GACCGTACCGGCACCGGGACGATTTCGGTGTTTGGCTACCAGATGCGATTTAACCTGGCA 581 Query 37769 GATGGATTTCCGCTCGTGACAACGAAAAAATTGCATATCCGCTCCATCATTTATGAACTG 37828 || ||||| ||||| |||| || |||||| | ||| | ||||| || | || || Sbjct 582 GAAGGATTCCCGCTACTGACGACTAAAAAAGTCCATTTGAAATCCATTATCCACGAGTTG 641 Query 37829 CTTTGGTTTTTAAAAGGCGATACGAACGTCCGCTATTTGCAGGAGAATGGCGTGACGATT 37888 | ||||||||||||||| || || | |||||| | || || ||||||| || Sbjct 642 TTATGGTTTTTAAAAGGCAGCACCAATATTGCCTATTTAAAAGAAAACGGCGTGAAAATC 701 Query 37889 TGGGATGAGTGGGCGGACGAAAACGGCGATCTCGGCCCGATTTACGGCGCGCAATGGCG- 37947 |||||||||||||| || | | || | || |||||| | || ||| || ||||| Sbjct 702 TGGGATGAGTGGGCAGATGCCGAAGGTAACCTGGGCCCGGTATATGGCTACCAGTGGCGT 761 Query 37948 --CTCGTGGAAGGGAGCAGACGGGAAAACCATCGACCAGATCGCATGGGTTGTCGAAGAG 38005 || | ||| | |||||| | || |||||||| | ||| || | || Sbjct 762 AACTGGCCCAAG---CCGGACGGGTCACATATAGACCAGATTACCCAGGTCATCAACCAG 818 Query 38006 ATCAAACGAAATCCGCATTCACGCCGGCTGCTGGTGAGCGCTTGGAATGTAGCAGAATTG 38065 |||||| | || ||||||| || || | || || |||||||| | || | Sbjct 819 ATCAAAAAGACGCCAGATTCACGTCGTTTGATCGTATCGGCCTGGAATGTCTCGGATATC 878 Query 38066 GACGAGATGAAGCTGCCGCCGTGTCATTACGCCTTT---CAGTTCTATGTCGCCAACGGC 38122 || | |||||| ||||||| || ||| || ||| ||||| |||||||| | || Sbjct 879 GAGCACATGAAGTTGCCGCCTTGCCAT---GCTTTTTTCCAGTTTTATGTCGCAGATGGG 935 Query 38123 CGGTTGTCATGCATGTGGCAGCAGCGCTCCGTTGATACGTTTTTAGGGTTGCCGTTTAAC 38182 | ||| ||| || | | ||||| | |||| || | || ||||||| || Sbjct 936 AGATTGAGTTGCCAGTTGTACCAGCGTAGTGCGGATATTTTCCTCGGCGTGCCGTTCAAT 995 Query 38183 ATCGCGAGCTACGCGCTGTTGACGCAT-ATGGTAGCCCAACAATGCGACTTGGATGTCGG 38241 || || ||| |||||| |||| ||| ||||| || ||| ||||||||| | | || Sbjct 996 ATTGCCTCCTATGCGCTGCTGAC-CATGATGGTGGCGCAAGCCTGCGACTTGCAATTAGG 1054 Query 38242 TGAACTCATTTTCACCGGC--GGCGACGTCCATTTGTACAAAAATCATCTGGAACA 38295 || | | | ||| || ||||| | ||| | ||||| || ||| |||| || Sbjct 1055 GGA--TTTTGTGCACACGCTGGGCGATGCGCATATCTACAATAACCATATGGACCA 1108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130621250383900