Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_023503.1 Length=48800 Score E Sequences producing significant alignments: (Bits) Value seq6877 226 9e-55 >seq6877 Length=1594 Score = 226 bits (250), Expect = 9e-55 Identities = 630/947 (67%), Gaps = 36/947 (4%) Strand=Plus/Minus Query 1987 GGTGCCAACGCTATTCTTGGTGTGTCTATCGC-TGTAGCACGCGCAGCTGCTGACTACCT 2045 || || || || ||||| ||||||||||| || ||| || || || || ||||| | Sbjct 1573 GGCGCAAATGCGATTCTGGGTGTGTCTATGGCCTGT-GCTCGTGCTGCAGCTGAAGAAAG 1515 Query 2046 TGAAGTTCCACTTTACAGCTACCTTGGCGGATTCAACACTAAAGTTCTT-CCAACTCCAA 2104 || | || | || | ||||| || || ||| || | | | || || || || | Sbjct 1514 TGGTTTGCCTTTGTATCGTTACCTGGGTGG-TTCTGCATTCATGCAATTGCCTACGCCTA 1456 Query 2105 TGATGAACATCATCAACGGTGGTTCTCACTCAGACGCTCCAATCGCTTTCCAAGAATTTA 2164 ||||||| ||||||||||||||| | || |||| | | | | |||| || || | Sbjct 1455 TGATGAATATCATCAACGGTGGTGCGCATGCAGATAACTCTGTGGATATCCAGGAGTTCA 1396 Query 2165 TGATTGTACCTGCTGGTGCACCAACATTCAAAGAAGCGCTTCGTTGGGGTGCTGAAATCT 2224 ||||||| || ||||| ||||| ||| ||||| | ||| || |||||||||| Sbjct 1395 TGATTGTGCCGGCTGGCCTGCCAACGTTCCGCGAAGCATTGCGTGCTGGCGCTGAAATCT 1336 Query 2225 TCCACGCGCTTAAGAAAATCCTTAAAGAACGTGGACTTGAAACAGCCGTAGGTGACGAAG 2284 |||| || | || |||| || | || || || | || | || ||||| || | Sbjct 1335 TCCATGCATTGAAAAAAACGCTGCATGACAAAGGTCTGGCGACGACAGTGGGTGATGAGG 1276 Query 2285 GTGGTTTCGCACCTCGTTTCGACGGAACTGAAGATGGTG--TTGAAACT-ATCATCAAAG 2341 ||||||| |||||| | | | | || | || || ||| || | ||||| || Sbjct 1275 GTGGTTTTGCACCTAACCT-GCC--ATCTAACGAGTCTGCATTGCAATTGATCATGGAAT 1219 Query 2342 CTATCGAAGCTGCTGGATATGTACCAGGTAAAGACGTATTTATC--GGACTTGACTGTGC 2399 | || |||||||| || || | ||||| || || ||| || | || || || || || Sbjct 1218 CGATTGAAGCTGCAGGTTACGAGCCAGGCAAGGA--TATCTACCTGGGCCTGGATTGCGC 1161 Query 2400 ATCATCTGAATTCTACGATGCAGAACGTAAAGTTTACGACTACACTAAATTTGAAGGTGA 2459 | | || |||||| | ||| ||||| ||| || | ||| || Sbjct 1160 AAGTACCGAGTTCTACAA---AGATGGTAAA---TACCACC---------TGGAATCAGA 1116 Query 2460 AGGCGCTGCTGTTCGTACTGCTGCAGAACAAATCGACTACCTTGAAGAATTGGTTAACAA 2519 ||||||| | | | | |||| || || || ||||| | |||| | ||| Sbjct 1115 AGGCGCTTCACTAACTTCAGCTG-AGTTCACT--GATTACCTGGCTACGTTGGCTGGCAA 1059 Query 2520 ATACCCAATCATCACTATCGAAGATGGTATGGACGAAAACGACTGGGACGGTTGGAAATC 2579 |||||| |||||||| ||||||||||| ||||| ||| |||||||| || ||| | || Sbjct 1058 ATACCCTATCATCACCATCGAAGATGGCATGGATGAATTCGACTGGGCAGGCTGGGA-TC 1000 Query 2580 T-CTTACTGAACGTCTTGGTGGTAAAGTTCAATTGGTTGGTGACGACTTCTTCGTAACTA 2638 | || || |||| || ||| | || |||| ||||| ||||| || || || | Sbjct 999 TGCTGACAAAACGCCTGGGTAAAACCACCCAGCTGGTCGGTGATGACTTGTTTGTGACCA 940 Query 2639 ACACTGCTTACCTTGAAAAAGGTATTGCAGAACA-CGCTGCTAACTCAATCCTTATCAAA 2697 || | ||| |||| || ||||| || ||||||||| | || |||||| Sbjct 939 ACCCGAAAATCCTGCGTGAAGGCATC-CAGAAGGGCGTAGCTAACTCAGTGCTGATCAAA 881 Query 2698 GTTAACCAAATCGGTACTTTGACTGAAACTTTTGACGCTATCGAAATGGCGAAAGAAGCT 2757 |||||||| ||||||||||||||||| ||||| | | || || |||||||| || Sbjct 880 GTTAACCAGATCGGTACTTTGACTGAGACTTTCCAGACGATAGAGATGGCGAAGCGTGCA 821 Query 2758 GGATACACAGCAGTAGTATCACACCGTTCAGGTGAAACTGAAGATTCAACAATCGCTGAT 2817 ||||| || || || || ||||| || || ||||| |||||| | || || || ||| Sbjct 820 AACTACACGGCTGTGGTTTCTCACCGCTCTGGCGAAACAGAAGATACGACTATTGCCGAT 761 Query 2818 ATTGCAGTTGCAACTAACGCTGGTCAAATTAAGACAGGTTCATTGTCACGTACTGACCGT 2877 || | || || || ||||| ||||| || || ||||| | | || | || ||| Sbjct 760 ATCTCTGTCGCCACCAACGCATTGCAAATCAAAACGGGTTCGCTATGCCGGTCCGAGCGT 701 Query 2878 ATTGCTAAATACAACCAATTGCTTCGTATCGAAGACCAACTTGGTGA 2924 || || || |||||||| ||||| ||||| ||||| || | ||||| Sbjct 700 ATCGCCAAGTACAACCAGTTGCTGCGTATTGAAGAAGAATTGGGTGA 654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 156016005173784