Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020
15-10-27] 12,086 sequences; 74,456,230 total letters
Query= NC_031120.1
Length=241147
Score E
Sequences producing significant alignments: (Bits) Value
seq8929 159 5e-34
seq3145 104 4e-17
>seq8929
Length=1248
Score = 159 bits (176), Expect = 5e-34
Identities = 181/240 (75%), Gaps = 2/240 (1%)
Strand=Plus/Plus
Query 196124 GACCGTACCGGCACAGGCACTA-CGTCCTATCTCGGCGCACAGATGCGCTTCGATCTGCA 196182
||||| ||||| || ||||| | | | | ||||| |||||||||||||||||
Sbjct 867 GACCGCACCGGTACCGGCACGCGCAGCGTGT-TCGGCTGGCAGATGCGCTTCGATCTCAC 925
Query 196183 AGACGGATTCCCGCTGGTCACCACGAAGAAACTCCATCTGCGTTCCATCATTCATGAACT 196242
| ||| || |||||||||||||| ||||| || |||||||| || ||||| || || ||
Sbjct 926 TGCCGGCTTTCCGCTGGTCACCACCAAGAAGCTGCATCTGCGCTCGATCATCCACGAGCT 985
Query 196243 GCTGTGGTTCCTCAACGGGGACACCAACATCAAGTACCTGAATGACAACGGTGTCTCTAT 196302
||||||||| || | || || ||||||||| ||| ||||| |||||| || |||
Sbjct 986 GCTGTGGTTTCTGCAGGGCGATACCAACATCGGGTATCTGAAAGACAACCAGGTGCGTAT 1045
Query 196303 CTGGAACGAGTGGGCGAACGAACTCGGTAACCTGGGGCCGGTTTACGGTAAGCAGTGGCG 196362
|||| |||| ||||| |||| || |||| || ||||| ||||| |||||||||||
Sbjct 1046 CTGGGACGAATGGGCCGACGACAATGGCGACCTTGGCCCGGTGTACGGCAAGCAGTGGCG 1105
>seq3145
Length=4143
Score = 104 bits (114), Expect = 4e-17
Identities = 209/307 (68%), Gaps = 6/307 (2%)
Strand=Plus/Plus
Query 196066 CATGCATCAGTATCACGAACTCTTACAGCAGGTGCTCAGTATCGGCCACGACAAAGCTGA 196125
|||||| |||||||| || || | | || || ||| ||| ||| | ||| | ||
Sbjct 464 CATGCAACAGTATCATGATCTGCTCAACCACGTACTCGCACACGGGCACCAGAAAACCGA 523
Query 196126 CCGTACCGGCACAGGCACTACGTCCTATCTCGGCGCACAGATGCGCTTCGATCTGCAAGA 196185
|||||||||||| || || | || | ||| |||||||| || | ||| |||
Sbjct 524 CCGTACCGGCACCGGGACGATTTCGGTGTTTGGCTACCAGATGCGATTTAACCTGGCAGA 583
Query 196186 CGGATTCCCGCTGGTCACCACGAAGAAACTCCATCTGCGTTCCATCATTCATGAACTGCT 196245
||||||||||| | || || || ||| ||||| || ||||| || || || || |
Sbjct 584 AGGATTCCCGCTACTGACGACTAAAAAAGTCCATTTGAAATCCATTATCCACGAGTTGTT 643
Query 196246 GTGGTTCCTCAACGGGGACACCAACATCAAGTACCTGAATGACAACGGTGTCTCTATCTG 196305
||||| | || || |||||| || || | || || ||||| || |||||
Sbjct 644 ATGGTTTTTAAAAGGCAGCACCAATATTGCCTATTTAAAAGAAAACGGCGTGAAAATCTG 703
Query 196306 GAACGAGTGGGC-GA--ACGAACTCGGTAACCTGGGGCCGGTTTACGGTAAGCAGTGGCG 196362
| | |||||||| || |||| ||||||||||| ||||| || || | ||||||||
Sbjct 704 GGATGAGTGGGCAGATGCCGAA---GGTAACCTGGGCCCGGTATATGGCTACCAGTGGCG 760
Query 196363 TGAATGG 196369
| | |||
Sbjct 761 TAACTGG 767
Score = 84.2 bits (92), Expect = 3e-11
Identities = 73/91 (80%), Gaps = 0/91 (0%)
Strand=Plus/Plus
Query 196783 TTGTCAGCTGTATCAGCGTAGTGCGGATATGTTCCTCGGTGTACCGTTCAACATCGCGTC 196842
||| ||| |||| ||||||||||||||||| |||||||| || |||||||| || || ||
Sbjct 944 TTGCCAGTTGTACCAGCGTAGTGCGGATATTTTCCTCGGCGTGCCGTTCAATATTGCCTC 1003
Query 196843 TTACGCATTGCTGATTCACATGGTGGCGCAA 196873
|| || |||||| ||||||||||||
Sbjct 1004 CTATGCGCTGCTGACCATGATGGTGGCGCAA 1034
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 771425839231920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |