Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_031120.1 Length=241147 Score E Sequences producing significant alignments: (Bits) Value seq8929 159 5e-34 seq3145 104 4e-17 >seq8929 Length=1248 Score = 159 bits (176), Expect = 5e-34 Identities = 181/240 (75%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 196124 GACCGTACCGGCACAGGCACTA-CGTCCTATCTCGGCGCACAGATGCGCTTCGATCTGCA 196182 ||||| ||||| || ||||| | | | | ||||| ||||||||||||||||| Sbjct 867 GACCGCACCGGTACCGGCACGCGCAGCGTGT-TCGGCTGGCAGATGCGCTTCGATCTCAC 925 Query 196183 AGACGGATTCCCGCTGGTCACCACGAAGAAACTCCATCTGCGTTCCATCATTCATGAACT 196242 | ||| || |||||||||||||| ||||| || |||||||| || ||||| || || || Sbjct 926 TGCCGGCTTTCCGCTGGTCACCACCAAGAAGCTGCATCTGCGCTCGATCATCCACGAGCT 985 Query 196243 GCTGTGGTTCCTCAACGGGGACACCAACATCAAGTACCTGAATGACAACGGTGTCTCTAT 196302 ||||||||| || | || || ||||||||| ||| ||||| |||||| || ||| Sbjct 986 GCTGTGGTTTCTGCAGGGCGATACCAACATCGGGTATCTGAAAGACAACCAGGTGCGTAT 1045 Query 196303 CTGGAACGAGTGGGCGAACGAACTCGGTAACCTGGGGCCGGTTTACGGTAAGCAGTGGCG 196362 |||| |||| ||||| |||| || |||| || ||||| ||||| ||||||||||| Sbjct 1046 CTGGGACGAATGGGCCGACGACAATGGCGACCTTGGCCCGGTGTACGGCAAGCAGTGGCG 1105 >seq3145 Length=4143 Score = 104 bits (114), Expect = 4e-17 Identities = 209/307 (68%), Gaps = 6/307 (2%) Strand=Plus/Plus Query 196066 CATGCATCAGTATCACGAACTCTTACAGCAGGTGCTCAGTATCGGCCACGACAAAGCTGA 196125 |||||| |||||||| || || | | || || ||| ||| ||| | ||| | || Sbjct 464 CATGCAACAGTATCATGATCTGCTCAACCACGTACTCGCACACGGGCACCAGAAAACCGA 523 Query 196126 CCGTACCGGCACAGGCACTACGTCCTATCTCGGCGCACAGATGCGCTTCGATCTGCAAGA 196185 |||||||||||| || || | || | ||| |||||||| || | ||| ||| Sbjct 524 CCGTACCGGCACCGGGACGATTTCGGTGTTTGGCTACCAGATGCGATTTAACCTGGCAGA 583 Query 196186 CGGATTCCCGCTGGTCACCACGAAGAAACTCCATCTGCGTTCCATCATTCATGAACTGCT 196245 ||||||||||| | || || || ||| ||||| || ||||| || || || || | Sbjct 584 AGGATTCCCGCTACTGACGACTAAAAAAGTCCATTTGAAATCCATTATCCACGAGTTGTT 643 Query 196246 GTGGTTCCTCAACGGGGACACCAACATCAAGTACCTGAATGACAACGGTGTCTCTATCTG 196305 ||||| | || || |||||| || || | || || ||||| || ||||| Sbjct 644 ATGGTTTTTAAAAGGCAGCACCAATATTGCCTATTTAAAAGAAAACGGCGTGAAAATCTG 703 Query 196306 GAACGAGTGGGC-GA--ACGAACTCGGTAACCTGGGGCCGGTTTACGGTAAGCAGTGGCG 196362 | | |||||||| || |||| ||||||||||| ||||| || || | |||||||| Sbjct 704 GGATGAGTGGGCAGATGCCGAA---GGTAACCTGGGCCCGGTATATGGCTACCAGTGGCG 760 Query 196363 TGAATGG 196369 | | ||| Sbjct 761 TAACTGG 767 Score = 84.2 bits (92), Expect = 3e-11 Identities = 73/91 (80%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 196783 TTGTCAGCTGTATCAGCGTAGTGCGGATATGTTCCTCGGTGTACCGTTCAACATCGCGTC 196842 ||| ||| |||| ||||||||||||||||| |||||||| || |||||||| || || || Sbjct 944 TTGCCAGTTGTACCAGCGTAGTGCGGATATTTTCCTCGGCGTGCCGTTCAATATTGCCTC 1003 Query 196843 TTACGCATTGCTGATTCACATGGTGGCGCAA 196873 || || |||||| |||||||||||| Sbjct 1004 CTATGCGCTGCTGACCATGATGGTGGCGCAA 1034 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 771425839231920