Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_031906.1 Length=198190 Score E Sequences producing significant alignments: (Bits) Value seq5177 105 8e-18 seq5020 84.2 3e-11 seq3900 84.2 3e-11 seq5297 82.4 1e-10 >seq5177 Length=2144 Score = 105 bits (116), Expect = 8e-18 Identities = 229/337 (68%), Gaps = 13/337 (4%) Strand=Plus/Plus Query 176576 AACGTTTATATCCTTGAGGGTATTCGTTTCTATGTTTCTTTCGCTTGCTCCTTTGCTTTC 176635 ||||| ||||||| || | || || ||||| || ||||| ||||| || || || Sbjct 559 AACGTGAATATCCTGGAAGCGATCCGCTTCTACGTCAGCTTCGCCTGCTCATTCGCCTTT 618 Query 176636 GGTGAACTGAAGATGATGGAGGGTAACGCCAAGATCATCGGACTGATTGCTCGCGATGAG 176695 | || | ||| ||||||| || ||||||||||||||| | |||||||| || ||||| Sbjct 619 GCCGAGCGCAAGGTGATGGAAGGCAACGCCAAGATCATCCGCCTGATTGCGCGTGATGAA 678 Query 176696 TCACAGCACATGACCATCACCCAGAACATCATTAAGA--AGTGGTTGGAAGGT---GATG 176750 | | |||| ||||| ||||||| |||| | || | | ||| ||| || | Sbjct 679 GCCCTGCACCTGACCGGCACCCAGCACATGCTCAACATCATGCGTT--CCGGTCAAGACG 736 Query 176751 ATCCAGAGATGCGTGAGATCGCCAAGGAAGAAGAGGAT--AACGTCATT-GAGATGTTCA 176807 | || ||| | ||||| ||| | ||| | || | || || |||||||||| Sbjct 737 ACCCCGAGTTCGCCGAGATTGCC---GCTGAATTGCATCAAGAGTGTTTCGAGATGTTCA 793 Query 176808 AACAGTGTGTTGAGGAAGAGAAAAACTGGGCAGAGTATCTGTTCAAAGACGGCAGCATGA 176867 || | ||| | || ||| | |||||||| || ||||| ||||| ||| ||||| Sbjct 794 AAACCGCCGCCGAGCAGGAAAAACAATGGGCAGAATACCTGTTTAAAGATGGCTCCATGA 853 Query 176868 TCGGACTGAATGACAAACTGCTCTCCAAGTATGTTGA 176904 | || ||||| | | | |||| | |||||||||| Sbjct 854 TAGGCCTGAACAAAGACATCCTCTGCCAGTATGTTGA 890 >seq5020 Length=2230 Score = 84.2 bits (92), Expect = 3e-11 Identities = 71/87 (82%), Gaps = 3/87 (3%) Strand=Plus/Minus Query 165734 GGAAGAGTGGCAGAGTGGTTGATTGCATCAGTCTTGAAAACTGACGTG---TTAGTAGCA 165790 ||||||||||||||| |||| | ||| ||||||||||||||| || | | | | Sbjct 1302 GGAAGAGTGGCAGAGCGGTTTAATGCTACAGTCTTGAAAACTGTCGAGGGTTCACGCCCT 1243 Query 165791 CCGTGAGTTCGAATCTCACCTCTTCCG 165817 ||||||||||||||||||||||||||| Sbjct 1242 CCGTGAGTTCGAATCTCACCTCTTCCG 1216 >seq3900 Length=3081 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/73 (86%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 19331 GGGGAATTAGCTCAAC-GGTAGAGCACCTGCTTTGCAAGCAGGGGGTTATCGGTTCGAAT 19389 |||| |||||||| | || ||||||||||||||||||||||||||| |||||||||| Sbjct 2435 GGGGCTTTAGCTCAGCTGGGAGAGCACCTGCTTTGCAAGCAGGGGGTCATCGGTTCGATC 2494 Query 19390 CCGATATTCTCCA 19402 |||||| ||||| Sbjct 2495 CCGATAAGCTCCA 2507 >seq5297 Length=2090 Score = 82.4 bits (90), Expect = 1e-10 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 19528 ATTCCTCTATAGCTCAATCGGCAGAGCATCTGACTGTTAATCAGAGGGTTCCTGGTTCGA 19587 ||||||| |||||||| |||| ||||| | ||||||||||| | ||| |||||||||| Sbjct 1243 ATTCCTCAATAGCTCAGTCGGTAGAGCGCCGGACTGTTAATCCGTAGGTCCCTGGTTCGA 1302 Query 19588 GTCCAGGTGGAGGAG 19602 | |||||| |||||| Sbjct 1303 GCCCAGGTTGAGGAG 1317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633984206364000