Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020
15-10-27] 12,086 sequences; 74,456,230 total letters
Query= NC_031906.1
Length=198190
Score E
Sequences producing significant alignments: (Bits) Value
seq5177 105 8e-18
seq5020 84.2 3e-11
seq3900 84.2 3e-11
seq5297 82.4 1e-10
>seq5177
Length=2144
Score = 105 bits (116), Expect = 8e-18
Identities = 229/337 (68%), Gaps = 13/337 (4%)
Strand=Plus/Plus
Query 176576 AACGTTTATATCCTTGAGGGTATTCGTTTCTATGTTTCTTTCGCTTGCTCCTTTGCTTTC 176635
||||| ||||||| || | || || ||||| || ||||| ||||| || || ||
Sbjct 559 AACGTGAATATCCTGGAAGCGATCCGCTTCTACGTCAGCTTCGCCTGCTCATTCGCCTTT 618
Query 176636 GGTGAACTGAAGATGATGGAGGGTAACGCCAAGATCATCGGACTGATTGCTCGCGATGAG 176695
| || | ||| ||||||| || ||||||||||||||| | |||||||| || |||||
Sbjct 619 GCCGAGCGCAAGGTGATGGAAGGCAACGCCAAGATCATCCGCCTGATTGCGCGTGATGAA 678
Query 176696 TCACAGCACATGACCATCACCCAGAACATCATTAAGA--AGTGGTTGGAAGGT---GATG 176750
| | |||| ||||| ||||||| |||| | || | | ||| ||| || |
Sbjct 679 GCCCTGCACCTGACCGGCACCCAGCACATGCTCAACATCATGCGTT--CCGGTCAAGACG 736
Query 176751 ATCCAGAGATGCGTGAGATCGCCAAGGAAGAAGAGGAT--AACGTCATT-GAGATGTTCA 176807
| || ||| | ||||| ||| | ||| | || | || || ||||||||||
Sbjct 737 ACCCCGAGTTCGCCGAGATTGCC---GCTGAATTGCATCAAGAGTGTTTCGAGATGTTCA 793
Query 176808 AACAGTGTGTTGAGGAAGAGAAAAACTGGGCAGAGTATCTGTTCAAAGACGGCAGCATGA 176867
|| | ||| | || ||| | |||||||| || ||||| ||||| ||| |||||
Sbjct 794 AAACCGCCGCCGAGCAGGAAAAACAATGGGCAGAATACCTGTTTAAAGATGGCTCCATGA 853
Query 176868 TCGGACTGAATGACAAACTGCTCTCCAAGTATGTTGA 176904
| || ||||| | | | |||| | ||||||||||
Sbjct 854 TAGGCCTGAACAAAGACATCCTCTGCCAGTATGTTGA 890
>seq5020
Length=2230
Score = 84.2 bits (92), Expect = 3e-11
Identities = 71/87 (82%), Gaps = 3/87 (3%)
Strand=Plus/Minus
Query 165734 GGAAGAGTGGCAGAGTGGTTGATTGCATCAGTCTTGAAAACTGACGTG---TTAGTAGCA 165790
||||||||||||||| |||| | ||| ||||||||||||||| || | | | |
Sbjct 1302 GGAAGAGTGGCAGAGCGGTTTAATGCTACAGTCTTGAAAACTGTCGAGGGTTCACGCCCT 1243
Query 165791 CCGTGAGTTCGAATCTCACCTCTTCCG 165817
|||||||||||||||||||||||||||
Sbjct 1242 CCGTGAGTTCGAATCTCACCTCTTCCG 1216
>seq3900
Length=3081
Score = 84.2 bits (92), Expect = 3e-11
Identities = 63/73 (86%), Gaps = 1/73 (1%)
Strand=Plus/Plus
Query 19331 GGGGAATTAGCTCAAC-GGTAGAGCACCTGCTTTGCAAGCAGGGGGTTATCGGTTCGAAT 19389
|||| |||||||| | || ||||||||||||||||||||||||||| ||||||||||
Sbjct 2435 GGGGCTTTAGCTCAGCTGGGAGAGCACCTGCTTTGCAAGCAGGGGGTCATCGGTTCGATC 2494
Query 19390 CCGATATTCTCCA 19402
|||||| |||||
Sbjct 2495 CCGATAAGCTCCA 2507
>seq5297
Length=2090
Score = 82.4 bits (90), Expect = 1e-10
Identities = 63/75 (84%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 19528 ATTCCTCTATAGCTCAATCGGCAGAGCATCTGACTGTTAATCAGAGGGTTCCTGGTTCGA 19587
||||||| |||||||| |||| ||||| | ||||||||||| | ||| ||||||||||
Sbjct 1243 ATTCCTCAATAGCTCAGTCGGTAGAGCGCCGGACTGTTAATCCGTAGGTCCCTGGTTCGA 1302
Query 19588 GTCCAGGTGGAGGAG 19602
| |||||| ||||||
Sbjct 1303 GCCCAGGTTGAGGAG 1317
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633984206364000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |